Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5136 138 8e-28 seq5134 125 5e-24 seq3746 89.7 3e-13 >seq5136 Length=173398 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || ||||| ||||| || || ||||| | | Sbjct 116801 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTGGAGGTTGAGCCTTCA 116742 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| ||||| || || | || |||||||| Sbjct 116741 GACACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 116682 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || ||||||||||||||||| |||| ||||||| | || |||||| Sbjct 116681 CAGCGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACTCTTTCTGACTACAAC 116622 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||||||| | |||||||| Sbjct 116621 ATTCAGAAGGAGTCCACACTTCATTTAGT 116593 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || |||||||| |||||||| ||||| | || || || || | Sbjct 116346 AATGCAGATCTTTGTGAAGACCCTCACTGGAAAAACCATCACCTTGGAGGTCGAACCCTC 116287 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || | |||| | || || ||||| | || ||||||| Sbjct 116286 CGATACCATCGAGAATGTGAAGGCTAAAA-TCCAGGATAAGGAAGGAATCCCCCCAGATC 116228 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| || || |||||||| |||||| |||| |||| |||||| | |||||| | Sbjct 116227 AGCAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGACGCACCCTGTCCGATTATA 116168 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || ||||||||||| || || || ||| | | | || |||||| Sbjct 116167 ACATCCAGAAAGAGTCCACTTTGCACTTGGTTCTCCGTCTTCGTGGAGGA 116118 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || | || ||||| || ||||| || ||||| || | | Sbjct 116118 AATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTCGAGCCATC 116059 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | |||| || || ||||| || || | || |||||||| Sbjct 116058 CGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCA 115999 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || |||||||||||||| |||| |||||| | ||||||||| Sbjct 115998 GCAGCGTCTCATCTTCGCTGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAA 115939 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || | ||||| || Sbjct 115938 CATCCAGAAGGAGTCTACCCTCCATTTGGT 115909 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || ||||| || ||||| || | | Sbjct 116573 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCATCC 116514 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| ||||| ||||| || || | || |||||||| Sbjct 116513 GACACAATTGAGAATGTAAAAGCCAAAATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 116454 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| ||||| || || ||||| | |||||| | ||||||||| Sbjct 116453 CAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCTGATTACAAC 116394 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || || | ||||| || Sbjct 116393 ATTCAGAAGGAATCTACCCTCCATTTGGT 116365 >seq5134 Length=897107 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || |||||||| || || || | Sbjct 635704 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCT 635763 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 635764 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 635823 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | ||||| | || || Sbjct 635824 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 635883 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || |||||||| || || || || Sbjct 635884 AACATTCAGAAGGAGTCCACTTTGCACTTGGT 635915 >seq3746 Length=358675 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || || || ||||| | || || || | || Sbjct 174396 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 174337 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || || ||||| Sbjct 174336 GACACCATCGAGAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 174278 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| |||| |||||| | ||| ||||| Sbjct 174277 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAA 174218 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 174217 CATCCAGAAGGAGTCGAC 174200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985982952364