Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4121 158 3e-33 seq5136 145 2e-29 seq3746 122 2e-22 seq5134 114 3e-20 seq1413 86.0 1e-11 seq1165 86.0 1e-11 >seq4121 Length=254077 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | ||| || ||||| || || |||| || ||||||| ||| || Sbjct 190184 ACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGT 190243 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || || || || || || || Sbjct 190244 GCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCC 190303 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| |||||||| || |||| ||| || || || Sbjct 190304 CTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGGTTCGACCTCCAA 190363 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| |||||||| || | || | ||||||||| Sbjct 190364 AGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCATTTT 190408 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | ||| || ||||| || || |||| || ||||||| ||| || Sbjct 189272 ACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAAGGT 189331 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || || || || || || || Sbjct 189332 GCGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGAGGGATTCC 189391 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| || ||||| || |||| || || || | Sbjct 189392 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAGGGCTCAACCTCAAG 189451 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || |||| ||| || | ||| | ||||| Sbjct 189452 GGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189493 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | || | ||| || || || |||| ||||| |||| | ||| Sbjct 189044 ACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGAGT 189103 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| | || || || || || || || || Sbjct 189104 GCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCC 189163 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| |||||| || ||||| || || | || || || || Sbjct 189164 CTCCTTGTCTTGGATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCGACCTCCAA 189223 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| || | ||| | ||||| Sbjct 189224 AGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 189265 >seq5136 Length=173398 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || || || || |||| || ||||||| || ||| Sbjct 115668 ACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGAGT 115727 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || || |||||||| | ||| || ||||| || ||||| || Sbjct 115728 ACGTCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCC 115787 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || || ||||| ||| || ||||||||||||||| | || || || | Sbjct 115788 TTCCTTATCCTGAATCTTAGCCTTGACGTTTTCGATGGTGTCTGAAGGCTCAACCTCAAG 115847 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| |||||||| ||||| || || | ||| | ||||||| Sbjct 115848 AGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATT 115890 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||||| || || || || |||| |||||||||| || || Sbjct 115896 ACGAAGACGGAGGACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGGACAGGGT 115955 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || || || ||||||||||| || || || || || || || || || Sbjct 115956 GCGTCCGTCCTCCAGTTGTTTGCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCC 116015 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| ||| ||||||||||| || | || || || | Sbjct 116016 CTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACTTCCAG 116075 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || |||||||| || | ||| | |||||| Sbjct 116076 GGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATT 116118 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | |||||| || || |||| ||||| || | | || | |||||| Sbjct 115222 AGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGTCCATCT 115281 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || || || || || || || ||||||||| Sbjct 115282 TCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCT 115341 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| |||||||| || |||| ||| || || | ||||| ||| Sbjct 115342 TGGATTTTAGCCTTCACATTCTCGATGGTATCAGAGGGTTCGACCTCCAGGGTGATGGTC 115401 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| | ||||| Sbjct 115402 TTGCCAGTCAAAGTCTTCACGAATATCTGCAT 115433 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| | |||||| || || |||| ||||| |||| || ||| Sbjct 114985 CGAAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTA 115044 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || || ||||| || |||||||| || || || || || || ||||| || Sbjct 115045 CGTCCGTCCTCCAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCC 115104 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || |||||||| ||| ||| ||||||||||| || | || || || | Sbjct 115105 TCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCGGATGGCTCGACTTCCAGG 115164 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || |||||||| || | ||| | |||||| Sbjct 115165 GTGATGGTTTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 115205 Score = 116 bits (128), Expect = 9e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||| || ||||| || || | |||||||| | | ||| | ||||||| Sbjct 116362 AGGACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCT 116421 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| | || || || || || ||||| || ||||||||| Sbjct 116422 TCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 116481 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| || || ||||| || | || || || | ||||| || Sbjct 116482 TGGAT-TTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGACTTCCAGGGTGATGGT 116540 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 116541 CTTGCCAGTCA 116551 Score = 104 bits (114), Expect = 6e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||| ||||| || |||| ||||| || | | ||| Sbjct 115440 ACGAAGACGCAACACCAAATGCAAAGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGT 115499 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| |||||||| || || || || || || || || || || Sbjct 115500 ACGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGGATTCC 115559 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||| || ||||||| || || || || |||| || || || | Sbjct 115560 CTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCCAG 115619 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || | || || | ||| | ||||| Sbjct 115620 GGTGATTGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 115661 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || ||||| || || || | ||||| || | | ||| | || || Sbjct 116590 AGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCGTCC 116649 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || |||||||| | ||| || || || || ||||| || |||||||| Sbjct 116650 TCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 116709 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || ||| ||||||||||| | || || || | ||||| || Sbjct 116710 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAACCTCCAGGGTGATGGTT 116769 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 116770 TTGCCAGT 116777 >seq3746 Length=358675 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| ||||| |||| || || | || || Sbjct 174185 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 174244 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || || || |||||||| Sbjct 174245 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 174304 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || || ||||| ||| Sbjct 174305 TGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 174364 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | || | |||||| Sbjct 174365 TTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 174396 >seq5134 Length=897107 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| | |||||| || || || | || || || | | || Sbjct 635928 ACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 635869 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || || || || ||||| || Sbjct 635868 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 635809 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| |||||| || || || | ||| || || | Sbjct 635808 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAG 635749 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 ||||| ||||||||||| | || || | ||| | ||||| || || Sbjct 635748 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTG 635701 >seq1413 Length=14959 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||| || |||||||||||||||| |||||||||||| ||| || |||| | Sbjct 5095 GGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGTCGA 5036 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||||||| ||||| Sbjct 5035 AAGACGACGTATAGGGCCTGAC 5014 >seq1165 Length=1059 Score = 86.0 bits (94), Expect = 1e-11 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 370672 TTCAGGATGA-CCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTG 370730 |||||| ||| ||||||||||| |||||||||||||| | || ||||| ||||| || | Sbjct 439 TTCAGGGTGAACCAAAAAATCAAAATAAATGTTGATATAAAATTGGATCTCCTCCTCCAG 380 Query 370731 ATGGATCAAAAAAGCTAG-TATTAAAATTTCTATCAGTTAA 370770 ||||||||| || || |||| ||||||| || ||||| Sbjct 379 CTGGATCAAAGAATGAAGTTATTTAAATTTCGGTCTGTTAA 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192443603738702