Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5503 181 9e-41 seq5134 181 9e-41 >seq5503 Length=77054 Score = 181 bits (200), Expect = 9e-41 Identities = 262/365 (72%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 29584 CTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAAT 29643 || |||| || || ||| ||| |||||||||| | |||| | ||| ||||| Sbjct 66266 CTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTTACGCTCCAGCTGCTC 66325 Query 29644 CCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTC 29703 |||| || ||||| || | |||||||| || | || |||| |||||| ||||| || Sbjct 66326 TTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCATGGTGTGTACAAAGTC 66385 Query 29704 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29763 ||| |||| ||| || || || || || ||||||| ||||| || | |||| |||||| Sbjct 66386 TCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGAT 66445 Query 29764 GTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTC 29823 ||| |||||||| || || |||||||| | || |||||| |||||||| |||||||| Sbjct 66446 GTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAGCTGGCAGGAGAGCTC 66505 Query 29824 TCCGTCGC-TC------ACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATG 29875 ||| ||| || ||||| ||||| || |||| |||||||| || |||||||| Sbjct 66506 GCCG-CGCGTCTGTGAGACGTAGAACTGGGCCA-GGCAGTGGCACGGCGGCAGGGCCATC 66563 Query 29876 AGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTC 29935 | ||| || |||||||| ||| ||||||||||||||| || || ||| Sbjct 66564 TTGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTCCGAGGGATTATTC 66623 Query 29936 CTGAT 29940 |||| Sbjct 66624 TTGAT 66628 >seq5134 Length=897107 Score = 181 bits (200), Expect = 9e-41 Identities = 262/365 (72%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 29584 CTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAAT 29643 || |||| || || ||| ||| |||||||||| | |||| | ||| ||||| Sbjct 890982 CTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTTACGCTCCAGCTGCTC 890923 Query 29644 CCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTC 29703 |||| || ||||| || | |||||||| || | || |||| |||||| ||||| || Sbjct 890922 TTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCATGGTGTGTACAAAGTC 890863 Query 29704 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29763 ||| |||| ||| || || || || || ||||||| ||||| || | |||| |||||| Sbjct 890862 TCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGAT 890803 Query 29764 GTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTC 29823 ||| |||||||| || || |||||||| | || |||||| |||||||| |||||||| Sbjct 890802 GTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAGCTGGCAGGAGAGCTC 890743 Query 29824 TCCGTCGC-TC------ACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATG 29875 ||| ||| || ||||| ||||| || |||| |||||||| || |||||||| Sbjct 890742 GCCG-CGCGTCTGTGAGACGTAGAACTGGGCCA-GGCAGTGGCACGGCGGCAGGGCCATC 890685 Query 29876 AGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTC 29935 | ||| || |||||||| ||| ||||||||||||||| || || ||| Sbjct 890684 TTGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTCCGAGGGATTATTC 890625 Query 29936 CTGAT 29940 |||| Sbjct 890624 TTGAT 890620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406134820996438