Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5503 205 7e-48 seq5134 205 7e-48 >seq5503 Length=77054 Score = 205 bits (226), Expect = 7e-48 Identities = 441/656 (67%), Gaps = 10/656 (2%) Strand=Plus/Plus Query 27078 CTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGT 27137 || |||| || || ||| ||| |||||||||| | |||| | ||| ||||| Sbjct 66266 CTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTTACGCTCCAGCTGCTC 66325 Query 27138 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 27197 ||||| || ||||| |||| |||||||| || | ||| |||| |||||| ||||| || Sbjct 66326 TTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCATGGTGTGTACAAAGTC 66385 Query 27198 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 27257 ||| |||| ||| || || || || || ||||||| ||||| || | |||| |||||| Sbjct 66386 TCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGAT 66445 Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 27317 ||| ||||| || || || |||||||| | || |||||| ||||| || |||||||| Sbjct 66446 GTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAGCTGGCAGGAGAGCTC 66505 Query 27318 TCCATCGCTT-------ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370 || ||| | ||||| ||||| | | ||||||||| || || ||||| Sbjct 66506 GCCG-CGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGTGGCACGGCGGCAGGGCCATCT 66564 Query 27371 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 27430 | | ||| || |||||||| ||| ||||||||||||||| || || ||| Sbjct 66565 TGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCT 66624 Query 27431 TGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT-AGTCTACCCTC 27489 |||| ||| | | | ||||||| || | ||| | || || | | | | | Sbjct 66625 TGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGCTGTAATTGTCGTCGC 66684 Query 27490 ATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCT 27549 | || | |||||| || |||||||| | ||| ||||| || |||||||| || ||||| Sbjct 66685 AGGTGC-CGTACTCCGCCCCGAAATGACGCCACTGGAAGCCATACACCGGGCCGAGGTCG 66743 Query 27550 CCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 27609 ||| | | | | | | |||| |||||||| || || | || | ||| | ||| Sbjct 66744 CCCACGGCGCGCTCCGTGTGGCCCAGCTTGTCCAGGAACTCCCGGGTGCTGTTCCCATCC 66803 Query 27610 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669 ||||| | || ||| | ||| |||| || || || || ||||| Sbjct 66804 CAGATATGAACGTTCTTGGCCTGCAGCAGCTTGGCGTCCGTCTGGCCAGCCACAAACCAG 66863 Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||||||||||| | || || | ||||| | |||||| || || ||||| || Sbjct 66864 AGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTGGTGGTCAGCAGGGGGAA 66919 >seq5134 Length=897107 Score = 205 bits (226), Expect = 7e-48 Identities = 441/656 (67%), Gaps = 10/656 (2%) Strand=Plus/Minus Query 27078 CTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGT 27137 || |||| || || ||| ||| |||||||||| | |||| | ||| ||||| Sbjct 890982 CTGCACCTGCCGCTTGATCACCAGCTTGGGAAAGGGACGCGGCTTACGCTCCAGCTGCTC 890923 Query 27138 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 27197 ||||| || ||||| |||| |||||||| || | ||| |||| |||||| ||||| || Sbjct 890922 TTTCAGGGGCTCCACATGATTTAGGTAGACATGCGTGTCGCCCATGGTGTGTACAAAGTC 890863 Query 27198 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 27257 ||| |||| ||| || || || || || ||||||| ||||| || | |||| |||||| Sbjct 890862 TCCTGGTTTTAGACCCGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGAT 890803 Query 27258 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 27317 ||| ||||| || || || |||||||| | || |||||| ||||| || |||||||| Sbjct 890802 GTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGGTACAGCTGGCAGGAGAGCTC 890743 Query 27318 TCCATCGCTT-------ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370 || ||| | ||||| ||||| | | ||||||||| || || ||||| Sbjct 890742 GCCG-CGCGTCTGTGAGACGTAGAACTGGGCCAGGCAGTGGCACGGCGGCAGGGCCATCT 890684 Query 27371 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 27430 | | ||| || |||||||| ||| ||||||||||||||| || || ||| Sbjct 890683 TGGGTATGTCCAGCGGATTCCAGGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCT 890624 Query 27431 TGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT-AGTCTACCCTC 27489 |||| ||| | | | ||||||| || | ||| | || || | | | | | Sbjct 890623 TGATAGTGTCGATCACCTGGCGCAGCTGGTCGATGCCCTTGCCGCTGTAATTGTCGTCGC 890564 Query 27490 ATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCT 27549 | || | |||||| || |||||||| | ||| ||||| || |||||||| || ||||| Sbjct 890563 AGGTGC-CGTACTCCGCCCCGAAATGACGCCACTGGAAGCCATACACCGGGCCGAGGTCG 890505 Query 27550 CCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 27609 ||| | | | | | | |||| |||||||| || || | || | ||| | ||| Sbjct 890504 CCCACGGCGCGCTCCGTGTGGCCCAGCTTGTCCAGGAACTCCCGGGTGCTGTTCCCATCC 890445 Query 27610 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669 ||||| | || ||| | ||| |||| || || || || ||||| Sbjct 890444 CAGATATGAACGTTCTTGGCCTGCAGCAGCTTGGCGTCCGTCTGGCCAGCCACAAACCAG 890385 Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||||||||||| | || || | ||||| | |||||| || || ||||| || Sbjct 890384 AGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTGGTGGTCAGCAGGGGGAA 890329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369481382185523