Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5134 316 3e-81 >seq5134 Length=897107 Score = 316 bits (350), Expect = 3e-81 Identities = 1208/1877 (64%), Gaps = 36/1877 (2%) Strand=Plus/Plus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 || ||||||| ||| ||||| || | | | || || ||||| || || || ||||| Sbjct 539118 TTTTTATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAATACATC 539177 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 || ||||| ||||| |||| || || || ||| ||||| || ||| | Sbjct 539178 CCTGTTTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGTAATTC 539237 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || || || | ||||||||| | ||||||||| || || ||||| || || | ||| || Sbjct 539238 GGCTCTGCCACATGAATATTGAACGACTGACTCTGGTCTATGAACGCACCCCGATCTGCG 539297 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 |||||||| || ||| ||| | |||||||| | || ||| | | | || | Sbjct 539298 GCCATTTTAATGGTGGACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGC-GA-A 539355 Query 77010 TCATCTGG---AAGGTTTG--TATTTTGAATGGAACCACCATCT-GATATAATTGTATTC 77063 | ||||| | || | ||||||| ||||| || || || || || || ||| Sbjct 539356 CCTTCTGGGGAATGGACTCGATATTTTGGATGGAGCC-CCTGCTCGAGATGATCTGGTTC 539414 Query 77064 TTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 || || || || | |||||| | | ||| |||| | || || | |||| | ||||| Sbjct 539415 TTCATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACC 539474 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 | || || || ||||||| || | | ||||||||||| |||| || || || | Sbjct 539475 ACCTGGAACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAG 539534 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 ||||| ||||| |||| || ||||||||||| || || ||||| || || || | | Sbjct 539535 GATTCGTTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGG 539594 Query 77244 CTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 77302 || | || ||| || || | |||| || || || | || ||| ||||| |||| Sbjct 539595 GAGTTCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTTTGCCAGTCCCACAGATT 539653 Query 77303 TGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATT 77362 | || | ||||| | ||||| || |||||||| || || | || | Sbjct 539654 CGTTGGCTCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTC 539713 Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 || ||||| || |||||||| | | || ||||| || || ||||||| || ||||| Sbjct 539714 GTAGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTA 539773 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCAATACTATCAAACGG 77479 || || || ||||| |||| || || ||| | ||| || || ||| | || Sbjct 539774 GTAGATGGTCTCGAATATCTGCTGGTTCAAGAGGCC---TGCCTCCTCGCTTTCATAGGG 539830 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 | | | ||||| | ||| || || ||||||||||| || || || | ||| | ||| Sbjct 539831 GAATCGCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATG 539890 Query 77540 TCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATT 77599 ||| ||||| | || || ||||| | |||||| | || ||||| || || || || Sbjct 539891 CCTCAAGTTGGACTTCTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTT 539950 Query 77600 GAGATTTCT-AACAACTACTT--TAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTT 77654 ||||||| | || | ||| || || ||||| || || || ||| | |||| Sbjct 539951 GAGATTTTTGGTCACCGTCTTGGTA---ACTTCCTTGAGCTTCTTGAAGTCATACGTCTT 540007 Query 77655 C-CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT 77713 | | | | |||||||| || | || || || || | || || || || | ||||| Sbjct 540008 CTCGGGTGTGACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGGCAATCTCATC 540067 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 || || || | | || ||||| || | || || || ||||| ||||| | ||| Sbjct 540068 AGGCGAGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGGTGCCGACATT 540127 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 || ||||||||||| ||||| | ||||| | || || | || |||| ||||| Sbjct 540128 CTGCTGGTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGTTCCCAGTTTC 540187 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATC 77892 | ||| | || || || | ||| | |||| ||| || | | | ||| | Sbjct 540188 CACCTGAGCCTCAATGATGGCGAACCAAAGGGACT-GAGCCTTCACCGTTCGGTTGGCAC 540246 Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA 77952 | | |||| || || | || | || ||| || ||||| ||||| ||||| | | Sbjct 540247 GACCCTCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCACACATCGTGAA 540306 Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 || ||||||| | |||||||| | ||||| || |||| ||| || || |||| Sbjct 540307 GGCCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGACGCGCTTCA 540366 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 |||||||||| |||||||| || || || ||||| |||| | | || || || | Sbjct 540367 TAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCTCCTCCTTGC 540426 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | || ||||| || || || || ||||| | | || || ||||| || || || || | Sbjct 540427 CGGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAA 540486 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 | || | | || || || || || |||||||| | ||| | || || || Sbjct 540487 TGGCAAAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCACATTGTTGA 540546 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 | || |||| ||| |||| | || || || || || || || || |||| | | | Sbjct 540547 AGACCCTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAATCGAGGTGC 540606 Query 78253 CACTTGCGCGAATATTACTAATGGA----TATCCCTATTCCTCCTGCCATCTTAGATATT 78308 | | || || || | |||| || ||| || || || ||| ||| || || Sbjct 540607 CCTTCGCCCGGAT----GCAGTGGACATTTAGCCCGATGCCGCCAGCCGACTTCGAGATC 540662 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368 | ||||| | | || | | | | || ||||| || ||| || ||||| | || Sbjct 540663 ATGGCGCACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTGAGG 540722 Query 78369 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 || ||||| |||| || | || || | || ||| | ||| || || ||| Sbjct 540723 AGGAAACACGAGGACAGCTGCGGCCGATTCGTGGCAGCGGCAAAAAGTGTGGGCGACGCA 540782 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 || || || | || || | ||||| || ||||| | |||| || || ||| Sbjct 540783 TGGGTGAAGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATATCCTCC 540842 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 || ||||| | ||| || ||||||| ||| ||||| || | || | |||| Sbjct 540843 CCGTGTATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGGCGCTCGGCGATCTTGCCG 540902 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 ||| | |||| ||| || || ||| | || || || ||||| |||||||| |||| Sbjct 540903 TTTCTCTTCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTAGTTGTACCCAAAG 540962 Query 78609 TCTCTCTCGTAAATAAT 78625 || | |||||||| || Sbjct 540963 TCGCGATCGTAAATTAT 540979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694619018297120