Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq1655 104 7e-18 >seq1655 Length=1316 Score = 104 bits (114), Expect = 7e-18 Identities = 222/325 (68%), Gaps = 10/325 (3%) Strand=Plus/Plus Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTG-ACGTACCTGAT 40141 ||||| || |||||| || || |||||||||||| ||| || | || || || Sbjct 467 CCGAACGTGATGATCTGCGCCACACGGTCCGCCCCGTA-TTCACGCCGCACATAGGCTAT 525 Query 40142 CACGTCGCCCCGTCGCCGGTCATC---GAAGTCGATGTCAACGTCGGGCATGGACACGCG 40198 ||| ||| | ||||||||| | ||||||||| |||| ||| ||||||||||| || Sbjct 526 CACCTCGTC---TCGCCGGTCCTGACAGAAGTCGATATCAAAGTCAGGCATGGACACACG 582 Query 40199 CTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT 40258 || || ||||| ||||| ||||| | || | ||| | || || | ||| ||||| Sbjct 583 TTCAGGATTCAGAAACCGTTCGAACAGCAGATTGAACGGCAGCGGATCAATGTCCGTGAT 642 Query 40259 -GCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACA 40317 | | | || | ||| |||| ||||| ||| |||| ||||| || || || || | Sbjct 643 GGTCAACGC-CCATGCGGCCAGAGAACCTGCACCCGACCCACGCCCCGGCCCCACGGGAA 701 Query 40318 CGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACC 40377 | | | ||| |||| ||||||||| || |||| || |||||| ||||| | Sbjct 702 TATCATGCGTCTTCCCCCACTGGATGAAGTCCGCAACGATCATGAAGTAACCGGGGAAGC 761 Query 40378 CCAGCTGGATGATCATGTCGATCTC 40402 ||| || | ||| || || | ||| Sbjct 762 CCATCTTGGAGATAATATCCAGCTC 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160129897714424