Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5136 174 4e-38 seq4121 168 2e-36 seq3746 154 4e-32 seq5134 141 2e-28 >seq5136 Length=173398 Score = 174 bits (192), Expect = 4e-38 Identities = 164/208 (79%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || ||||| || ||||| || |||||| Sbjct 115886 CAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCTTCAGAC 115827 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| || |||||||| || || |||||||| Sbjct 115826 ACCATCGAAAACGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAG 115767 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||||||||||||||| ||||||||| | ||||| ||||||||||| || Sbjct 115766 CGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGACGTACTCTGTCCGATTATAACATC 115707 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 115706 CAGAAGGAGTCGACCCTTCA-CTTGGTT 115680 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| |||||||| |||||| | ||||| ||| ||| || Sbjct 116342 CAGATCTTTGTGAAGACCCTCACTGGAAAAACCATCACCTTGGAGGTCGAACCCTCCGAT 116283 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || || ||||| || ||||||||||| || || ||||| Sbjct 116282 ACCATCGAGAATGTGAAGGCTAAAATCCAGGATAAGGAAGGAATCCCCCCAGATCAGCAG 116223 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||||||||| | || || ||| | || || ||||||||||| || Sbjct 116222 CGATTGATCTTTGCCGGAAAACAATTGGAGGACGGACGCACCCTGTCCGATTATAACATC 116163 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||| || || |||| |||| || Sbjct 116162 CAGAAAGAGTCCACTTTGCA-CTTGGTT 116136 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || |||||||| |||||||| || || || || ||| Sbjct 115202 CAAATCTTCGTGAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAGCCATCCGAC 115143 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| ||||| || || ||||| || || || ||||| Sbjct 115142 ACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGATCAGCAG 115083 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| || || || || ||| | ||||| |||| || ||| || Sbjct 115082 CGTCTCATCTTCGCCGGAAAGCAACTGGAGGACGGACGTACTCTGTCCGACTACAACATC 115023 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 115022 CAGAAGGAGTCCACTTTGCA-CTTG 114999 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || ||||| |||||||| ||||| || |||||| Sbjct 116798 CAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTGGAGGTTGAGCCTTCAGAC 116739 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || || |||||||| || ||||| || || || ||||| Sbjct 116738 ACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 116679 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| ||||| || || || ||| | |||||| | || || ||| | Sbjct 116678 CGATTGATCTTCGCCGGCAAACAACTGGAGGACGGACGCACTCTTTCTGACTACAACATT 116619 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || ||||| ||| Sbjct 116618 CAGAAGGAGTCCACACTTCAT 116598 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || || || || |||||||| ||||| ||| ||| || Sbjct 115430 CAGATATTCGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTCGAACCCTCTGAT 115371 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || || || ||||| || || ||||| || || ||||| Sbjct 115370 ACCATCGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATCCCCCCAGATCAGCAG 115311 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| ||||||||| | || ||| | || || ||| || Sbjct 115310 CGTTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAACATC 115251 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || |||| |||| || Sbjct 115250 CAGAAGGAGTCCACTTTGCA-CTTGGTT 115224 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || ||||| || |||||||| || || || || ||| Sbjct 116114 CAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTCGAGCCATCCGAC 116055 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| || ||||||||||| || ||||| Sbjct 116054 ACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCAGCAG 115995 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || ||||| || || || ||| | || || ||||||| ||| || Sbjct 115994 CGTCTCATCTTCGCTGGCAAACAACTGGAGGACGGACGCACCCTGTCCGATTACAACATC 115935 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 115934 CAGAAGGAGTCTACCCTCCAT 115914 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || |||||| | |||||||| || || Sbjct 117026 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCCGAT 116967 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| ||||| || || || || || || |||||||| Sbjct 116966 ACGATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAG 116907 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||||||||| ||||||||||||||| | || || |||| || ||| || Sbjct 116906 CGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGCACCCTGTCCGACTACAACATC 116847 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || ||| | ||| Sbjct 116846 CAGAAGGAATCCACCCTTCATTTGGTT 116820 >seq4121 Length=254077 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || ||||| || || ||||| ||||| ||| ||| || Sbjct 189946 CAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAACCCTCCGAT 189887 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || || ||||| || || ||||| Sbjct 189886 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGATCAGCAG 189827 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| ||||||||| | ||||| ||||||||||| || Sbjct 189826 CGTTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTATCCGATTATAACATC 189767 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || ||||| || || |||| Sbjct 189766 CAAAAGGAGTCAACCCTCCA-CTTG 189743 Score = 154 bits (170), Expect = 4e-32 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| ||||| ||| | || || || || ||||| | ||||| ||| Sbjct 190408 AAAATGC---AAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTCGAA 190352 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || ||||||||||| ||||| ||||| |||||||| || ||||||||||| Sbjct 190351 CCCTCCGATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCA 190292 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 || ||||| || || |||||||| ||||| ||||| || || ||| | || |||| |||| Sbjct 190291 GATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGCAC-CTTGTCCGA 190233 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||||| |||| || || || || || || |||| Sbjct 190232 TTATAACATCCAGAAGGAGTCCACCCTTCA-CTTG 190199 Score = 149 bits (164), Expect = 2e-30 Identities = 159/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || ||||| || || ||||| ||||| || ||| || Sbjct 189490 CAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTTGAGCCCTCCGAT 189431 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || ||||||||||| || ||||| Sbjct 189430 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 189371 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| ||||| ||||| || || ||| | || |||| ||||||||||| | Sbjct 189370 CGTCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGCAC-CTTGTCCGATTATAACAT 189312 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || || || |||| Sbjct 189311 CCAGAAGGAGTCCACCCTTCA-CTTG 189287 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || ||||| || |||||||||||||| || || || Sbjct 189718 CAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCTTCTGAT 189659 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| || |||||||| || || ||||| Sbjct 189658 ACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 189599 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| || |||||| | ||||| |||| || ||| || Sbjct 189598 CGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTACAACATC 189539 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 189538 CAGAAGGAGTCTACTTTGCAT 189518 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || ||||| | ||||| || || || Sbjct 189262 CAGATCTTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCCGAT 189203 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| || ||||| || ||||||||||| || ||||| Sbjct 189202 ACCATTGAGAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCAGCAG 189143 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || |||||| | ||||| |||| || ||| || Sbjct 189142 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTATCCGACTACAACATC 189083 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 189082 CAGAAGGAGTCTACTTTGCAT 189062 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| | ||||| ||| ||| || Sbjct 190174 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAACCCTCTGAT 190115 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || ||||||||||| || ||||| Sbjct 190114 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 190055 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || ||| | |||||| | || || ||| || Sbjct 190054 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTTTCTGACTACAACATC 189995 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 189994 CAGAAGGAGTCTACTTTGCAT 189974 >seq3746 Length=358675 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| ||||| || || || |||||| | |||||||| || ||| Sbjct 174393 CAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGAC 174334 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||||||| || || ||||| ||||| ||||| Sbjct 174333 ACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAG 174274 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || ||| | || || |||| || ||| || Sbjct 174273 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAACATC 174214 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 174213 CAGAAGGAGTCGACCCTGCA-CTTG 174190 >seq5134 Length=897107 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 635710 CAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCGGAT 635769 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 635770 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 635829 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || | || |||||| | Sbjct 635830 CGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATT 635889 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 635890 CAGAAGGAGTCCACTTTGCA-CTTG 635913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203642781053202