Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5136 141 9e-29 seq3746 136 4e-27 seq5134 122 8e-23 seq4121 122 8e-23 >seq5136 Length=173398 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||| ||| || ||| |||||||| ||||| |||||||| Sbjct 116802 GCCTCCGCGGAGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 116861 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || ||||||||||| |||||||| |||| ||||| ||||| | ||| Sbjct 116862 CAGGGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGG 116921 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || | |||||| ||| ||| || ||||| | | || ||| | |||||| Sbjct 116922 AATACCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCCAC 116981 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || || |||| ||||| || || ||||||||||| Sbjct 116982 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTT 117032 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || | ||| || ||| ||||||||||||||| ||||| || Sbjct 116575 CCACCGCGCAGACGGAGGACTAAATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAA 116634 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || || || ||||||||||| |||| ||||| || || | |||| Sbjct 116635 AGAGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGGGGA 116694 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || |||| || | ||| | | ||||| | ||| || Sbjct 116695 ATTCCCTCCTTGTCC-TGGATTTTAGCCTTGACGTTTTCAATGGTGTCTGAAGGCTCAAC 116753 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || ||||| || || || ||||| || || ||||||||| Sbjct 116754 CTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 116802 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || |||||||||||||| || || || Sbjct 116347 CCACCACGGAGACGGAGGACCAAATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAA 116406 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| | || || ||||||||||| || || |||| ||||| || || | ||| Sbjct 116407 AGAGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 116466 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || |||| |||| || | | |||||| | ||| || Sbjct 116467 ATTCCCTCCTTGT-CTTGGATTTTGGCTTTTACATTCTCAATTGTGTCGGATGGCTCGAC 116525 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||||||||| || || |||||||| Sbjct 116526 TTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 116573 >seq3746 Length=358675 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||||| ||||| || ||||||||| ||||| |||||||| Sbjct 174170 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 174229 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||||||||| ||||| ||||| || |||| ||| Sbjct 174230 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 174289 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||| | | | ||||| | ||||||| Sbjct 174290 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACC 174349 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || || || || || || || || |||||| Sbjct 174350 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATG 174397 >seq5134 Length=897107 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||| ||| ||||||||||||||||||||| ||| Sbjct 635933 CCACCACGCAGGCGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 635874 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||| ||||| || || | ||| Sbjct 635873 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 635814 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| | || |||| || | | ||| || | || || Sbjct 635813 ATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 635755 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || ||||| ||||| |||||||| || Sbjct 635754 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 635704 >seq4121 Length=254077 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || ||||||||| ||||| |||||||| Sbjct 189495 CCACCACGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAT 189554 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 189555 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGG 189614 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||| ||| | | || || | ||| || Sbjct 189615 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTTTCGATGGTATCAGAAGGCTCAAC 189673 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || |||| ||||| ||||| ||||||||| Sbjct 189674 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATG 189722 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || ||||||||| ||||| ||||| || Sbjct 189951 CCACCACGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAA 190010 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| |||| ||||| || || | || Sbjct 190011 AGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 190070 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | || || | || ||| Sbjct 190071 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCAGAGGGTTCAACC 190130 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || ||||| ||||| ||||| ||||||||| Sbjct 190131 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATG 190178 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || |||||| || |||||||| ||||| Sbjct 189722 GCCTCCTCGAAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTATAATCGGA 189781 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||||||||| |||| ||||| || || | ||| Sbjct 189782 TAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 189841 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||||| | | || ||| | || || Sbjct 189842 GATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAGGGTTCGAC 189901 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 189902 CTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 189949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462270870139600