Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3134 168 7e-37 >seq3134 Length=2474545 Score = 168 bits (186), Expect = 7e-37 Identities = 358/523 (68%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 16955 AACATCAG-ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGA 17013 |||||||| ||| || || |||||||| | ||||||||| | | ||| |||||||| || Sbjct 573910 AACATCAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGA 573852 Query 17014 AAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCC 17073 || || | |||||||| || || ||||| | |||||| || | || || || Sbjct 573851 GAAAGTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCC 573792 Query 17074 AGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GT 17132 |||||| || ||||| || | ||||| ||||| | || || | | | || | Sbjct 573791 GCTAAAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC 573732 Query 17133 CTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTA-TGCAATCCATCGT 17190 ||| | | || ||||| || |||| ||||| || |||| | ||| | || || Sbjct 573731 CTTAG--AGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGC-ATTGT 573675 Query 17191 TTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAG 17250 ||| || || ||||||| | || | || | ||| |||||| || || || || Sbjct 573674 TTCAATTGCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAG 573615 Query 17251 TAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCG 17310 | |||||||||||| ||||| | |||||||||||||||||||| || || ||||| || Sbjct 573614 GACGCTGTACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACG 573555 Query 17311 GGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCC 17370 || || | || ||||||||| | || || || | ||||| ||||| || ||||| Sbjct 573554 AGCCTCTGTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCC 573495 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAG 17430 ||| ||||| ||||| |||| | ||| |||||||| |||| ||| || Sbjct 573494 ATCGGAGGCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAG 573435 Query 17431 AACGCG-CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472 || | |||||| | | ||| || || | ||||||||| || Sbjct 573434 -GCGTGCCCAGTCAGTCAGATCCTTAGACAGATCCACTTCCTC 573393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517458070100400