Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3134 181 1e-40 >seq3134 Length=2474545 Score = 181 bits (200), Expect = 1e-40 Identities = 321/461 (70%), Gaps = 8/461 (2%) Strand=Plus/Minus Query 16193 AACATTAG-ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGA 16251 ||||| || ||| || ||||||||||| ||||| ||||| | | ||| |||||||| || Sbjct 573910 AACATCAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGA 573852 Query 16252 AAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCC 16311 ||||| | || ||||| || || ||||| | ||| || || | |||||| || Sbjct 573851 GAAAGTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCC 573792 Query 16312 CGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATC 16371 |||||| || |||||||||| ||||| ||||| | || ||| | | |||| | Sbjct 573791 GCTAAAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC 573732 Query 16372 TTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 ||| | || ||||| | |||| ||||| || | || | ||| |||| Sbjct 573731 CTTAG-AGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTT 573673 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | || || ||||| | | || | || |||| |||||| || |||||||| | Sbjct 573672 CAATTGCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGA 573613 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 ||||||||||| ||||| | ||||| |||||||||||||| ||||||||||| |||| Sbjct 573612 CGCTGTACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAG 573553 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGT 16610 |||| | || || |||||| | ||| || || |||| ||||| || || || || | Sbjct 573552 CCTCTGTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCAT 573493 Query 16611 CACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAAT 16649 | || |||||||| ||| || ||||| |||||||| Sbjct 573492 CGGAGGCGGCAAAAAAGGCCAGAACATGTG--AAATGAAAT 573454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511327907039600