Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3023 95.1 1e-14 >seq3023 Length=5802038 Score = 95.1 bits (104), Expect = 1e-14 Identities = 257/392 (66%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 18927 CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCA 18986 || || || || || || | |||||||| | |||||| ||| ||||| ||||| || Sbjct 3647553 CGTCGCATTATCATGTCCGCCTGGAATCCGATGGATATACCCAAAATGGCGCTACCGCCG 3647612 Query 18987 TGTCACACGTTATGTCAGTTTTACGTT--GCA----AACGGTGAATTATCCTGCCAAGTA 19040 || || | |||||| | || ||| || || ||||| |||||||| || Sbjct 3647613 TGCCATTGCCTGGTTCAGTTCTTTGTCTCGCAGTCCAAGGGCGAATTGTCCTGCCAGCTA 3647672 Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100 || || | | || ||||| || || || || ||||||||||| ||||| || Sbjct 3647673 TATCAACGCAGCGCTGACATGGGTCTCGGTGTTCCCTTCAACATTGCCTCCTATGCTCTG 3647732 Query 19101 CTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATG 19160 || || || || |||| ||||| || || || || |||| || || || || || || Sbjct 3647733 CTCACTTATTTAATAGCCCATGTGACGGGTCTGAAGCCCGGTGAATTCATCCACACCATA 3647792 Query 19161 GGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCC 19220 || ||||| || |||| | || |||||||| | | | |||| || || | Sbjct 3647793 GGCGATGCTCACGTTTATCTTAACCATATAGAACCGCTGCAGCAGCAGATAAAACGTAGC 3647852 Query 19221 CCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGACTTTAAA 19280 || || |||||||| || || |||| || | || ||| |||| | |||||| Sbjct 3647853 CCCAAGCCTTTTCCCAAGCTCAACATTAAGCGCCAGGTTACAAATATCGAGGACTTTTGC 3647912 Query 19281 TGGGACGATTTTCAGCTTGATGGATATAATCC 19312 | || |||||| | ||| ||| || ||||| Sbjct 3647913 TACGAGGATTTTGAAATTGTTGGCTACAATCC 3647944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399438123038850