Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq3023 95.1 1e-14
>seq3023
Length=5802038
Score = 95.1 bits (104), Expect = 1e-14
Identities = 257/392 (66%), Gaps = 6/392 (2%)
Strand=Plus/Plus
Query 18927 CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCA 18986
|| || || || || || | |||||||| | |||||| ||| ||||| ||||| ||
Sbjct 3647553 CGTCGCATTATCATGTCCGCCTGGAATCCGATGGATATACCCAAAATGGCGCTACCGCCG 3647612
Query 18987 TGTCACACGTTATGTCAGTTTTACGTT--GCA----AACGGTGAATTATCCTGCCAAGTA 19040
|| || | |||||| | || ||| || || ||||| |||||||| ||
Sbjct 3647613 TGCCATTGCCTGGTTCAGTTCTTTGTCTCGCAGTCCAAGGGCGAATTGTCCTGCCAGCTA 3647672
Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100
|| || | | || ||||| || || || || ||||||||||| ||||| ||
Sbjct 3647673 TATCAACGCAGCGCTGACATGGGTCTCGGTGTTCCCTTCAACATTGCCTCCTATGCTCTG 3647732
Query 19101 CTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATG 19160
|| || || || |||| ||||| || || || || |||| || || || || || ||
Sbjct 3647733 CTCACTTATTTAATAGCCCATGTGACGGGTCTGAAGCCCGGTGAATTCATCCACACCATA 3647792
Query 19161 GGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCC 19220
|| ||||| || |||| | || |||||||| | | | |||| || || |
Sbjct 3647793 GGCGATGCTCACGTTTATCTTAACCATATAGAACCGCTGCAGCAGCAGATAAAACGTAGC 3647852
Query 19221 CCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGACTTTAAA 19280
|| || |||||||| || || |||| || | || ||| |||| | ||||||
Sbjct 3647853 CCCAAGCCTTTTCCCAAGCTCAACATTAAGCGCCAGGTTACAAATATCGAGGACTTTTGC 3647912
Query 19281 TGGGACGATTTTCAGCTTGATGGATATAATCC 19312
| || |||||| | ||| ||| || |||||
Sbjct 3647913 TACGAGGATTTTGAAATTGTTGGCTACAATCC 3647944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399438123038850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |