Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq466 578 5e-160
seq3134 250 3e-61
>seq466
Length=100518
Score = 578 bits (640), Expect = 5e-160
Identities = 1246/1849 (67%), Gaps = 28/1849 (2%)
Strand=Plus/Minus
Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888
|| ||||| || || ||||| ||||| || ||||| || || |||| |||||
Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003
Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948
|| || ||||| ||| ||| | || || || | ||| ||||| | ||||||||||
Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943
Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008
||||| || || || || || || || |||||||| || | | |||| | || |||
Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883
Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATAGA 53064
|| | ||||| || || || | | | ||||| || | | || | |||| || |||||
Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGA 42824
Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124
||| | | | ||||| ||| || |||||||||| ||| || | ||| |||||
Sbjct 42823 TCCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAA 42764
Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184
| | | | | ||| ||||| || |||||||| || || |||||||||| | || ||
Sbjct 42763 ATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATA 42704
Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244
||| || || || || || | |||||||| || |||| ||||| ||||| |||||
Sbjct 42703 AATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGC 42644
Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT---- 53300
|| ||||| || || | | ||| ||||||| ||||| ||| ||||||
Sbjct 42643 TGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGAC 42589
Query 53301 CTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 53359
|||||| || | ||||| | ||||||||| | ||| |||
Sbjct 42588 CTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGT 42529
Query 53360 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 53418
| || || || || | | || ||| | ||| || || || || || ||||||| |
Sbjct 42528 AAAACTCCCTTGCTTACTGGACT-TCCAATATAGGTTTCATACGGGCCATCCTTCTTGGA 42470
Query 53419 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 53478
| ||||||||| || || || || || || ||||| ||||| ||||| | | ||| |
Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410
Query 53479 ATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 53538
| |||||| ||| ||| | ||| | | | ||||| || || ||||| || ||
Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350
Query 53539 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 53598
||| ||||||||||| ||||| | || | ||| || ||| || ||||| | ||
Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290
Query 53599 ATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTT 53658
|||||| || ||||| || |||||||| |||||| || || | ||| ||||| ||
Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230
Query 53659 CAGTTTGAGAAAATC---AAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGC 53715
|||||| || || | ||| | | | | ||||||||||| | || || |||||
Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGC 42170
Query 53716 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 53775
| |||||| || |||| || | | | | ||| | | || || ||||| | |||
Sbjct 42169 TAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATT 42110
Query 53776 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 53835
||| ||||| || ||||| | |||||||||||| || ||| ||||||||| || ||| |
Sbjct 42109 ACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAA 42050
Query 53836 AAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACAC- 53894
||| ||| | || |||||||| || | || ||||| || || || ||| | || |
Sbjct 42049 AAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAA-GAGATT 41991
Query 53895 GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAA 53954
||||||| | || || | || | ||| |||| ||| ||||||| |||||
Sbjct 41990 GAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCAA 41931
Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 54014
| || || |||||||||| | || || || |||| | ||||||||||||||||| |
Sbjct 41930 ATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAAT 41871
Query 54015 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 54074
| ||| | | || || ||||||||||||||||||||||| | || ||||||||
Sbjct 41870 CCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGAT 41811
Query 54075 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 54134
| | | | ||||||||| ||||| ||||| |||||||| || | || | | | |
Sbjct 41810 CCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGT 41751
Query 54135 CAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 54194
| |||||||| || |||| ||| || | | |||| || | ||| || |||||||
Sbjct 41750 CTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGAT 41691
Query 54195 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCAC 54254
| | || | || || ||| | ||||| | |||||| | | ||||| || | ||
Sbjct 41690 CGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTAC 41631
Query 54255 CATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCC 54314
|||| || ||||| ||| || | || | || |||||| | || ||||| || |
Sbjct 41630 CATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATGC 41571
Query 54315 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATAC 54374
| |||||| ||| ||||| | |||||| | | || || | | | || || || |||
Sbjct 41570 CTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAATAG 41511
Query 54375 TATC--AT-CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 54431
||| || |||| |||||| |||||||| || | |||| |||| | || | |
Sbjct 41510 AATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGCAG 41454
Query 54432 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 54491
|| ||| | || || || || || ||||| | ||| || |||| ||| || || |
Sbjct 41453 CAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTTT 41394
Query 54492 CGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 54551
| || || || || ||||| ||| || || | |||||||||||||| ||||||||
Sbjct 41393 CAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGTGCT 41334
Query 54552 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAA 54611
| |||| ||| | || ||| || ||||| ||||| || ||| || | || ||||
Sbjct 41333 GTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTTAA 41274
Query 54612 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660
| ||||| || || ||| ||| || || || ||||| || | |||||
Sbjct 41273 ATCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225
>seq3134
Length=2474545
Score = 250 bits (276), Expect = 3e-61
Identities = 567/842 (67%), Gaps = 17/842 (2%)
Strand=Plus/Minus
Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894
|| |||||| || ||||| ||||| ||| || || ||||| ||||| || || ||
Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142
Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAA- 23953
|| || |||||||||| | ||||| | || || | | || | |||||
Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGT-TTGCCGACCCCAAG 574083
Query 23954 TTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCAT 24013
|||| | || | ||| || |||||||| |||||| ||| | | | ||||||||
Sbjct 574082 TTCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCAT 574023
Query 24014 TCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 24073
|| || | || || || || || |||||||||| || |||||||| | || || ||
Sbjct 574022 GCCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATC 573963
Query 24074 TGTTATAATAGATCTTACTGTTTCT-TCACTCGGTGGA---TACAATAAATGTTTAAACA 24129
| || ||||| | || | | || || ||| | || ||||| | ||||
Sbjct 573962 GGAGAT----GATCTCAATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACA 573907
Query 24130 TCAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188
||| ||| || || ||||| || || |||||||| | || | |||||| || ||
Sbjct 573906 TCAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAA 573848
Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 24248
||||| |||||||| ||||||||||| || |||||||| || || ||||| || |
Sbjct 573847 GTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTA 573788
Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTG 24305
||||| || || || || || ||||| || || | | || ||| | | | || ||
Sbjct 573787 AAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC-CTT 573729
Query 24306 TCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364
| | |||||| | ||||| ||||||||| || || |||||||| || ||
Sbjct 573728 AGAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAAT 573669
Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424
|||||||| ||||| | | || ||| | |||||| ||||||| | ||
Sbjct 573668 TGCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCT 573609
Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484
||||||||||| || | || || ||||| || ||||| || ||||| || | ||||||
Sbjct 573608 GTACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTC 573549
Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544
|||||||| ||||| | ||| || || | | ||| || || || || || ||
Sbjct 573548 TGTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGA 573489
Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 24604
||| |||||||| |||| |||||| || |||| |||| ||||||
Sbjct 573488 GGCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGC 573429
Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664
||| ||| | | ||| ||||| | ||||||||| ||||| ||||| ||||||||||| ||
Sbjct 573428 CCAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369
Query 24665 CT 24666
||
Sbjct 573368 CT 573367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593621186834400
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