Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq466 578 5e-160 seq3134 250 3e-61 >seq466 Length=100518 Score = 578 bits (640), Expect = 5e-160 Identities = 1246/1849 (67%), Gaps = 28/1849 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| || || ||||| ||||| || ||||| || || |||| ||||| Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || || ||||| ||| ||| | || || || | ||| ||||| | |||||||||| Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || || || || || || || |||||||| || | | |||| | || ||| Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATAGA 53064 || | ||||| || || || | | | ||||| || | | || | |||| || ||||| Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGA 42824 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 ||| | | | ||||| ||| || |||||||||| ||| || | ||| ||||| Sbjct 42823 TCCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAA 42764 Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184 | | | | | ||| ||||| || |||||||| || || |||||||||| | || || Sbjct 42763 ATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATA 42704 Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244 ||| || || || || || | |||||||| || |||| ||||| ||||| ||||| Sbjct 42703 AATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGC 42644 Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT---- 53300 || ||||| || || | | ||| ||||||| ||||| ||| |||||| Sbjct 42643 TGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGAC 42589 Query 53301 CTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 53359 |||||| || | ||||| | ||||||||| | ||| ||| Sbjct 42588 CTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGT 42529 Query 53360 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 53418 | || || || || | | || ||| | ||| || || || || || ||||||| | Sbjct 42528 AAAACTCCCTTGCTTACTGGACT-TCCAATATAGGTTTCATACGGGCCATCCTTCTTGGA 42470 Query 53419 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 53478 | ||||||||| || || || || || || ||||| ||||| ||||| | | ||| | Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410 Query 53479 ATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 53538 | |||||| ||| ||| | ||| | | | ||||| || || ||||| || || Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350 Query 53539 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 53598 ||| ||||||||||| ||||| | || | ||| || ||| || ||||| | || Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290 Query 53599 ATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTT 53658 |||||| || ||||| || |||||||| |||||| || || | ||| ||||| || Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230 Query 53659 CAGTTTGAGAAAATC---AAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGC 53715 |||||| || || | ||| | | | | ||||||||||| | || || ||||| Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGC 42170 Query 53716 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 53775 | |||||| || |||| || | | | | ||| | | || || ||||| | ||| Sbjct 42169 TAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATT 42110 Query 53776 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 53835 ||| ||||| || ||||| | |||||||||||| || ||| ||||||||| || ||| | Sbjct 42109 ACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAA 42050 Query 53836 AAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACAC- 53894 ||| ||| | || |||||||| || | || ||||| || || || ||| | || | Sbjct 42049 AAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAA-GAGATT 41991 Query 53895 GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAA 53954 ||||||| | || || | || | ||| |||| ||| ||||||| ||||| Sbjct 41990 GAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCAA 41931 Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 54014 | || || |||||||||| | || || || |||| | ||||||||||||||||| | Sbjct 41930 ATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAAT 41871 Query 54015 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 54074 | ||| | | || || ||||||||||||||||||||||| | || |||||||| Sbjct 41870 CCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGAT 41811 Query 54075 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 54134 | | | | ||||||||| ||||| ||||| |||||||| || | || | | | | Sbjct 41810 CCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGT 41751 Query 54135 CAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 54194 | |||||||| || |||| ||| || | | |||| || | ||| || ||||||| Sbjct 41750 CTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGAT 41691 Query 54195 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCAC 54254 | | || | || || ||| | ||||| | |||||| | | ||||| || | || Sbjct 41690 CGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTAC 41631 Query 54255 CATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCC 54314 |||| || ||||| ||| || | || | || |||||| | || ||||| || | Sbjct 41630 CATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATGC 41571 Query 54315 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATAC 54374 | |||||| ||| ||||| | |||||| | | || || | | | || || || ||| Sbjct 41570 CTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAATAG 41511 Query 54375 TATC--AT-CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 54431 ||| || |||| |||||| |||||||| || | |||| |||| | || | | Sbjct 41510 AATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGCAG 41454 Query 54432 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 54491 || ||| | || || || || || ||||| | ||| || |||| ||| || || | Sbjct 41453 CAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTTT 41394 Query 54492 CGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 54551 | || || || || ||||| ||| || || | |||||||||||||| |||||||| Sbjct 41393 CAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGTGCT 41334 Query 54552 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAA 54611 | |||| ||| | || ||| || ||||| ||||| || ||| || | || |||| Sbjct 41333 GTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTTAA 41274 Query 54612 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 | ||||| || || ||| ||| || || || ||||| || | ||||| Sbjct 41273 ATCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225 >seq3134 Length=2474545 Score = 250 bits (276), Expect = 3e-61 Identities = 567/842 (67%), Gaps = 17/842 (2%) Strand=Plus/Minus Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894 || |||||| || ||||| ||||| ||| || || ||||| ||||| || || || Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142 Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAA- 23953 || || |||||||||| | ||||| | || || | | || | ||||| Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGT-TTGCCGACCCCAAG 574083 Query 23954 TTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCAT 24013 |||| | || | ||| || |||||||| |||||| ||| | | | |||||||| Sbjct 574082 TTCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCAT 574023 Query 24014 TCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 24073 || || | || || || || || |||||||||| || |||||||| | || || || Sbjct 574022 GCCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATC 573963 Query 24074 TGTTATAATAGATCTTACTGTTTCT-TCACTCGGTGGA---TACAATAAATGTTTAAACA 24129 | || ||||| | || | | || || ||| | || ||||| | |||| Sbjct 573962 GGAGAT----GATCTCAATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACA 573907 Query 24130 TCAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 ||| ||| || || ||||| || || |||||||| | || | |||||| || || Sbjct 573906 TCAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAA 573848 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 24248 ||||| |||||||| ||||||||||| || |||||||| || || ||||| || | Sbjct 573847 GTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTA 573788 Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTG 24305 ||||| || || || || || ||||| || || | | || ||| | | | || || Sbjct 573787 AAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC-CTT 573729 Query 24306 TCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 | | |||||| | ||||| ||||||||| || || |||||||| || || Sbjct 573728 AGAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAAT 573669 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 |||||||| ||||| | | || ||| | |||||| ||||||| | || Sbjct 573668 TGCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCT 573609 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||||||||||| || | || || ||||| || ||||| || ||||| || | |||||| Sbjct 573608 GTACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTC 573549 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 |||||||| ||||| | ||| || || | | ||| || || || || || || Sbjct 573548 TGTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGA 573489 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 24604 ||| |||||||| |||| |||||| || |||| |||| |||||| Sbjct 573488 GGCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGC 573429 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||| ||| | | ||| ||||| | ||||||||| ||||| ||||| ||||||||||| || Sbjct 573428 CCAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369 Query 24665 CT 24666 || Sbjct 573368 CT 573367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593621186834400