Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3023 129 7e-25 >seq3023 Length=5802038 Score = 129 bits (142), Expect = 7e-25 Identities = 273/406 (67%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 145540 ACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCC 145599 || ||||||||||| || || ||| | ||| | |||||| | | |||| ||||| Sbjct 3647974 ACGGCCATCTCCATTGGAATCGCCTTATCGGGATTGTAGCCAACAATTTCAAAATCCTCG 3647915 Query 145600 GCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGG 145659 | ||||| || || | ||| | | | || ||||| ||||||| ||| | Sbjct 3647914 TAGCAAAAGTCCTCGATATTTGTAACCTGGCGCTTAATGTTGAGCTTGGGAAAAGGCTTG 3647855 Query 145660 GGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719 ||||| | | | ||| ||| ||| || || | ||||| || || ||||| || || Sbjct 3647854 GGGCTACGTTTTATCTGCTGCTGCAGCGGTTCTATATGGTTAAGATAAACGTGAGCATCG 3647795 Query 145720 CCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTC 145779 || | | ||||||||| || ||||||| || ||||| | ||||| | | || || Sbjct 3647794 CCTATGGTGTGGATGAATTCACCGGGCTTCAGACCCGTCACATGGGCTATTAAATAAGTG 3647735 Query 145780 AGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGG 145839 ||||| | ||| ||| ||||||||||| || || || |||||||| | ||| || Sbjct 3647734 AGCAGAGCATAGGAGGCAATGTTGAAGGGAACACCGAGACCCATGTCAGCGCTGCGTTGA 3647675 Query 145840 TACAGCTGGCAGGAGAGCTCCCC----GCC--CGCCACGTAGAACTGGCACAGGAGGTGG 145893 || ||||||||||| | || || | | || || ||||||| |||| ||| Sbjct 3647674 TATAGCTGGCAGGACAATTCGCCCTTGGACTGCGAGACAAAGAACTGAACCAGGCAATGG 3647615 Query 145894 CAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGG 145939 || ||||| || ||||| ||| | ||| ||| |||||||||| Sbjct 3647614 CACGGCGGTAGCGCCATTTTGGGTATATCCATCGGATTCCAGGCGG 3647569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977003261200