Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 419 2e-112
seq3603 132 5e-26
seq359 123 3e-23
seq3378 114 1e-20
>seq3134
Length=2474545
Score = 419 bits (464), Expect = 2e-112
Identities = 543/746 (73%), Gaps = 8/746 (1%)
Strand=Plus/Plus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||||||||| || |||||||| || ||||| ||||| ||||| ||||| || ||||
Sbjct 573367 AGGCCGAGGCATCATTCTGGACTGTGGAGGAAGTGGATCTGTCTAAGGATCTGACTGACT 573426
Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774
||| ||| | | ||||||||||| |||||||| || || ||||||||||| ||||
Sbjct 573427 GGGCACGCCTAACAGACAACGAGCGTCATTTCATTTCACATGTTCTGGCCTTTTTTGCCG 573486
Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834
|| ||| ||||| || ||||||||||||||||||||||| ||||| || ||| |
Sbjct 573487 CCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGTTTTAGCCAGGAAGTTCAGATTA 573546
Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894
| ||||| || |||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 573547 CAGAGGCTCGTTGCTTCTATGGCTTTCAGATAGCCATGGAGAATGTCCACTCGGAAATGT 573606
Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954
| ||| || ||||| || | ||| | || | || | | || || |
Sbjct 573607 ACAGCGTCCTGATTGACACATATATACGCGATCCGCATCAGCGTGATTATCTATTTAATG 573666
Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014
| || || || |||||| || || ||||||||| |||||||| ||||| ||
Sbjct 573667 CAATTGAAACAATGCCGGCAGTTAAGCGGAAGGCCGACTGGGCGCTTTCTTGGATATCCT 573726
Query 117015 GCAGAGAGGCCGC---CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071
| |||| || ||| || |||||| | | || || || || || |||||| |||
Sbjct 573727 CTA---AGGCAGCTAACTTTGGGGAGCGCATCATCGCATTTGCTGCTGTTGAGGGCATCT 573783
Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131
||||| ||||| || || | || |||||||| ||||| || ||||| ||||||||||
Sbjct 573784 TCTTTAGCGGCAGCTTTGCTTCTATCTTTTGGCTGAAGAAGCGTGGCCTTATGCCCGGCC 573843
Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT- 117190
| |||||| ||||| || |||||| | |||||||| |||||||||||||||| ||||
Sbjct 573844 TCACTTTCTCGAACGAACTGATCTCCCGCGACGAGGGACTGCATTGCGACTTTG-CTGTC 573902
Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250
|| ||||| |||||||||||||||| || || | |||| ||| |||||| || ||
Sbjct 573903 CTGATGTTCCAGCATTTGGTGCAGCGTCCCTGCAGAGAGCGCATCATTGAGATCATCTCC 573962
Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310
|| || || |||| || ||| || || || || || |||||||| | || | ||
Sbjct 573963 GATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGCACTGCCGGTCAATTTGATCGGC 574022
Query 117311 CTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAG 117370
| ||||||| | ||||| |||| || ||||| || ||||| | |||||| | ||
Sbjct 574023 ATGAATTGCGCACTTATGTCCGAATATATTGAGTTTGTGGCCGATCGTCTGCTGGTTGAA 574082
Query 117371 CTGGTCGGCGCCAAGCACTACAACAC 117396
|| | | || ||| | ||||||||
Sbjct 574083 CTTGGGGTCGGCAAACTGTACAACAC 574108
>seq3603
Length=2672878
Score = 132 bits (146), Expect = 5e-26
Identities = 167/228 (73%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 40677 AACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 40736
|||||| ||||| ||||||| || || ||||| ||||| ||||| ||||||||| | ||
Sbjct 316119 AACGCTTGGAAAA-TGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGA 316177
Query 40737 CGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796
||||| || | |||| | | | | |||||| ||||| | |||||||| || ||
Sbjct 316178 GGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTAT 316237
Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856
|| | || ||||| || || |||| || ||||| |||||||| || | ||||||||
Sbjct 316238 TCCACCAGATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCT 316297
Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||| || |||||| | || |||| | ||| ||||
Sbjct 316298 TTCGGACTACAACATTCAAAAGGAGTCGACTTTGCACTTGGTGCTGCG 316345
>seq359
Length=456481
Score = 123 bits (136), Expect = 3e-23
Identities = 153/207 (74%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||||||||| | ||||| || ||||||||| | || || || |
Sbjct 65889 AAAATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTGGAGCCT 65948
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||| | | | |||| | |||| || || | ||||| ||||| ||||| | ||
Sbjct 65949 TCCGATACGATCGAGAACG-TGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGA 66007
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| || || |||| ||| ||||| || ||||| || | ||||| ||| |||||
Sbjct 66008 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTA 66067
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||||| | || || ||
Sbjct 66068 CAACATCCAGAAGGAGTCGACCCTCCA 66094
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || ||||| || ||||| || | || || || | ||
Sbjct 66120 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66179
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| |||||| || || | ||||| ||||| ||||| | |||||
Sbjct 66180 GATACGATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGACCA 66238
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| ||||| || ||||| || | ||||| ||| ||||||||
Sbjct 66239 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAA 66298
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| | || || ||
Sbjct 66299 TATCCAGAAGGAGTCGACCCTCCA 66322
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || ||||| || ||||| || | || || || | ||
Sbjct 66576 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66635
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| |||||| || || | ||||| |||||||| || | |||||
Sbjct 66636 GATACGATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCA 66694
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || ||||| || ||||| || | ||||| ||| ||||||||
Sbjct 66695 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAA 66754
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| | || || ||
Sbjct 66755 TATCCAGAAGGAGTCGACCCTCCA 66778
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || ||||| || ||||| || | || || || | |
Sbjct 66348 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTAGT 66407
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | |||| || |||| ||||| ||||| ||||| | |||||
Sbjct 66408 GATACCATTGAGAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCA 66466
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || ||||| || ||||| || | ||||| | || |||||
Sbjct 66467 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAA 66526
Query 40869 CATCCAGAAGGA 40880
||||||||||||
Sbjct 66527 CATCCAGAAGGA 66538
>seq3378
Length=5191987
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
||||| || ||||| || || | || ||||| ||||||||| | || || || |||| |
Sbjct 4216910 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 4216968
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | | | | | | |||| || || | ||||| |||||||| ||| | || ||
Sbjct 4216969 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 4217028
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| ||||| ||| |||| || | |||||| | |||||||||
Sbjct 4217029 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAA 4217088
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || ||||| ||
Sbjct 4217089 CATCCAGAAGGAGTCGACCCTTCATCTGGT 4217118
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
||||| || ||||| || || | || ||||| ||||||||| | || || || |||| |
Sbjct 4217594 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 4217652
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | | | | | | |||| || || | ||||| |||||||| ||| | || ||
Sbjct 4217653 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 4217712
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| ||||| ||| |||| || | |||||| | |||||||||
Sbjct 4217713 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAA 4217772
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || ||||| ||
Sbjct 4217773 CATCCAGAAGGAGTCGACCCTTCATCTGGT 4217802
Score = 105 bits (116), Expect = 7e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
||||| || ||||| || || | || ||||| || |||||| | || || || |||| |
Sbjct 4217138 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACCTTGGAGGTGGA-GCCATC 4217196
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | | | | | | |||| || || | ||||| ||||| || ||| | || ||
Sbjct 4217197 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 4217256
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| ||||| ||| |||| || | |||||| | |||||||||
Sbjct 4217257 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAA 4217316
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || ||||| ||
Sbjct 4217317 CATCCAGAAGGAGTCGACCCTTCATCTGGT 4217346
Score = 104 bits (114), Expect = 2e-17
Identities = 150/209 (72%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744
|||| ||||| || ||||| || || | || ||||| ||||||||| | || || || |
Sbjct 4216677 GAAATATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-G 4216735
Query 40745 CCA-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803
||| |||| | | | | | | |||| || || | ||||| ||||| || ||| |
Sbjct 4216736 CCATCCGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCA 4216795
Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863
|| ||||| || | |||| ||| || || |||||||| || | || || | ||||
Sbjct 4216796 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTACTTTGTCCGAC 4216855
Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||||||| |||| ||||
Sbjct 4216856 TACAACATCCAGAAGGAGTCCACTTTGCA 4216884
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
||||| || ||||| || || | || ||||| ||||||||| | || || || |||| |
Sbjct 4217366 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 4217424
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | | | | | | |||| || || | ||||| ||||| || ||| | || ||
Sbjct 4217425 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 4217484
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| ||||| |||||||| || | || || | |||||||||
Sbjct 4217485 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAA 4217544
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| |||| ||||
Sbjct 4217545 CATCCAGAAGGAGTCCACTTTGCA 4217568
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
||||| || ||||| || || | || ||||| ||||||||| | || || || |||| |
Sbjct 4217822 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 4217880
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | | | | | | |||| || || | ||||| ||||| || ||| | || ||
Sbjct 4217881 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 4217940
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| ||||| |||||||| || | || || | |||||||||
Sbjct 4217941 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAA 4218000
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| ||||||||| |||| |||| | || |||| || | |||||
Sbjct 4218001 CATTCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGG 4218048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515132063552800
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