Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3134 419 2e-112 seq3603 132 5e-26 seq359 123 3e-23 seq3378 114 1e-20 >seq3134 Length=2474545 Score = 419 bits (464), Expect = 2e-112 Identities = 543/746 (73%), Gaps = 8/746 (1%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||||||||| || |||||||| || ||||| ||||| ||||| ||||| || |||| Sbjct 573367 AGGCCGAGGCATCATTCTGGACTGTGGAGGAAGTGGATCTGTCTAAGGATCTGACTGACT 573426 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| ||| | | ||||||||||| |||||||| || || ||||||||||| |||| Sbjct 573427 GGGCACGCCTAACAGACAACGAGCGTCATTTCATTTCACATGTTCTGGCCTTTTTTGCCG 573486 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || ||| ||||| || ||||||||||||||||||||||| ||||| || ||| | Sbjct 573487 CCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGTTTTAGCCAGGAAGTTCAGATTA 573546 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || |||||||| ||||||||||| ||||||||||| || ||||||||||||| Sbjct 573547 CAGAGGCTCGTTGCTTCTATGGCTTTCAGATAGCCATGGAGAATGTCCACTCGGAAATGT 573606 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 | ||| || ||||| || | ||| | || | || | | || || | Sbjct 573607 ACAGCGTCCTGATTGACACATATATACGCGATCCGCATCAGCGTGATTATCTATTTAATG 573666 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014 | || || || |||||| || || ||||||||| |||||||| ||||| || Sbjct 573667 CAATTGAAACAATGCCGGCAGTTAAGCGGAAGGCCGACTGGGCGCTTTCTTGGATATCCT 573726 Query 117015 GCAGAGAGGCCGC---CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | |||| || ||| || |||||| | | || || || || || |||||| ||| Sbjct 573727 CTA---AGGCAGCTAACTTTGGGGAGCGCATCATCGCATTTGCTGCTGTTGAGGGCATCT 573783 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 ||||| ||||| || || | || |||||||| ||||| || ||||| |||||||||| Sbjct 573784 TCTTTAGCGGCAGCTTTGCTTCTATCTTTTGGCTGAAGAAGCGTGGCCTTATGCCCGGCC 573843 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT- 117190 | |||||| ||||| || |||||| | |||||||| |||||||||||||||| |||| Sbjct 573844 TCACTTTCTCGAACGAACTGATCTCCCGCGACGAGGGACTGCATTGCGACTTTG-CTGTC 573902 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250 || ||||| |||||||||||||||| || || | |||| ||| |||||| || || Sbjct 573903 CTGATGTTCCAGCATTTGGTGCAGCGTCCCTGCAGAGAGCGCATCATTGAGATCATCTCC 573962 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310 || || || |||| || ||| || || || || || |||||||| | || | || Sbjct 573963 GATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGCACTGCCGGTCAATTTGATCGGC 574022 Query 117311 CTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAG 117370 | ||||||| | ||||| |||| || ||||| || ||||| | |||||| | || Sbjct 574023 ATGAATTGCGCACTTATGTCCGAATATATTGAGTTTGTGGCCGATCGTCTGCTGGTTGAA 574082 Query 117371 CTGGTCGGCGCCAAGCACTACAACAC 117396 || | | || ||| | |||||||| Sbjct 574083 CTTGGGGTCGGCAAACTGTACAACAC 574108 >seq3603 Length=2672878 Score = 132 bits (146), Expect = 5e-26 Identities = 167/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 40677 AACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 40736 |||||| ||||| ||||||| || || ||||| ||||| ||||| ||||||||| | || Sbjct 316119 AACGCTTGGAAAA-TGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGA 316177 Query 40737 CGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796 ||||| || | |||| | | | | |||||| ||||| | |||||||| || || Sbjct 316178 GGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTAT 316237 Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 || | || ||||| || || |||| || ||||| |||||||| || | |||||||| Sbjct 316238 TCCACCAGATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCT 316297 Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| || |||||| | || |||| | ||| |||| Sbjct 316298 TTCGGACTACAACATTCAAAAGGAGTCGACTTTGCACTTGGTGCTGCG 316345 >seq359 Length=456481 Score = 123 bits (136), Expect = 3e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||||||||| | ||||| || ||||||||| | || || || | Sbjct 65889 AAAATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTGGAGCCT 65948 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | | |||| | |||| || || | ||||| ||||| ||||| | || Sbjct 65949 TCCGATACGATCGAGAACG-TGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGA 66007 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| || ||||| || | ||||| ||| ||||| Sbjct 66008 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTA 66067 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| | || || || Sbjct 66068 CAACATCCAGAAGGAGTCGACCCTCCA 66094 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || ||||| || | || || || | || Sbjct 66120 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66179 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| || || | ||||| ||||| ||||| | ||||| Sbjct 66180 GATACGATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGACCA 66238 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| || ||||| || | ||||| ||| |||||||| Sbjct 66239 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAA 66298 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 66299 TATCCAGAAGGAGTCGACCCTCCA 66322 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || ||||| || | || || || | || Sbjct 66576 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66635 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 66636 GATACGATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCA 66694 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| || ||||| || | ||||| ||| |||||||| Sbjct 66695 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAA 66754 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 66755 TATCCAGAAGGAGTCGACCCTCCA 66778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || ||||| || | || || || | | Sbjct 66348 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTAGT 66407 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || |||| ||||| ||||| ||||| | ||||| Sbjct 66408 GATACCATTGAGAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCA 66466 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| || ||||| || | ||||| | || ||||| Sbjct 66467 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAA 66526 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 66527 CATCCAGAAGGA 66538 >seq3378 Length=5191987 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || ||||| ||||||||| | || || || |||| | Sbjct 4216910 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 4216968 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || || | ||||| |||||||| ||| | || || Sbjct 4216969 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 4217028 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||| |||| || | |||||| | ||||||||| Sbjct 4217029 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAA 4217088 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 4217089 CATCCAGAAGGAGTCGACCCTTCATCTGGT 4217118 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || ||||| ||||||||| | || || || |||| | Sbjct 4217594 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 4217652 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || || | ||||| |||||||| ||| | || || Sbjct 4217653 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 4217712 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||| |||| || | |||||| | ||||||||| Sbjct 4217713 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAA 4217772 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 4217773 CATCCAGAAGGAGTCGACCCTTCATCTGGT 4217802 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || ||||| || |||||| | || || || |||| | Sbjct 4217138 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACCTTGGAGGTGGA-GCCATC 4217196 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || || | ||||| ||||| || ||| | || || Sbjct 4217197 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 4217256 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||| |||| || | |||||| | ||||||||| Sbjct 4217257 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAA 4217316 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 4217317 CATCCAGAAGGAGTCGACCCTTCATCTGGT 4217346 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| || || | || ||||| ||||||||| | || || || | Sbjct 4216677 GAAATATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-G 4216735 Query 40745 CCA-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 ||| |||| | | | | | | |||| || || | ||||| ||||| || ||| | Sbjct 4216736 CCATCCGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCA 4216795 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| || | |||| ||| || || |||||||| || | || || | |||| Sbjct 4216796 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTACTTTGTCCGAC 4216855 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||||| |||| |||| Sbjct 4216856 TACAACATCCAGAAGGAGTCCACTTTGCA 4216884 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || ||||| ||||||||| | || || || |||| | Sbjct 4217366 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 4217424 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || || | ||||| ||||| || ||| | || || Sbjct 4217425 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 4217484 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| || | || || | ||||||||| Sbjct 4217485 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAA 4217544 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| |||| Sbjct 4217545 CATCCAGAAGGAGTCCACTTTGCA 4217568 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || ||||| ||||||||| | || || || |||| | Sbjct 4217822 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 4217880 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || || | ||||| ||||| || ||| | || || Sbjct 4217881 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 4217940 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| || | || || | ||||||||| Sbjct 4217941 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAA 4218000 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| |||| |||| | || |||| || | ||||| Sbjct 4218001 CATTCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGG 4218048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515132063552800