Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3023 125 5e-24 >seq3023 Length=5802038 Score = 125 bits (138), Expect = 5e-24 Identities = 306/458 (67%), Gaps = 13/458 (3%) Strand=Plus/Minus Query 97007 TTGGGAAA-GGCCTGGGAGTTCGCGTAAGCTGCT-CTGTGAGAGCATCAATGTGATTCAC 97064 |||||||| ||| |||| | || | | ||||| ||| || | || || || || | Sbjct 3647869 TTGGGAAAAGGCTTGGGGCTACGTTTTATCTGCTGCTGC-AGCGGTTCTATATGGTTAAG 3647811 Query 97065 ATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATG 97124 ||||| ||||||||| |||| ||||| || ||||| || || | | | || ||||| Sbjct 3647810 ATAAACGTGAGCATCGCCTATGGTGTGGATGAATTCACCGGGCTTCAGACCCGTCACATG 3647751 Query 97125 GGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCAT 97184 ||| || | | |||| | |||| |||| |||||||| || || || || || ||||| Sbjct 3647750 GGCTATTAAATAAGTGAGCAGAGCATAGGAGGCAATGTTGAAGGGAACACCGAGACCCAT 3647691 Query 97185 ATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC------ACATAAAA 97238 ||||| | |||||||| ||| ||||| | | || | || ||| | || Sbjct 3647690 GTCAGCGCTGCGTTGATATAGCTGGCAGGACAATTCGCCCTTGGACTGCGAGACAAAGAA 3647631 Query 97239 CTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGC 97298 |||| || ||| || || || | ||||||||| || | ||| | |||||| || Sbjct 3647630 CTGAACCAGGCAATGGCACGGCGGTAGCGCCATTTTGGGTATATCCATCGGATTCCAGGC 3647571 Query 97299 ACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAA 97358 |||| | || | | ||| | || || || |||| |||| || | |||| ||| Sbjct 3647570 GGACATGATAATGCGACGATCCGAGGGATTGGTTCGTATCGTATGTATCACTTGCTGTAA 3647511 Query 97359 TTGATCAACGCCTTCTCCACCATAATTGTGCTT--AAGACCTTGATATTCTGCTCCAAAA 97416 ||| ||||| || | || |||| || | ||| | |||| || || ||||| Sbjct 3647510 TTGGTCAACACCCTGGCCGGTGTAATCGTCATCGCAAGTGC--GATACTCGGCGCCAAAG 3647453 Query 97417 TGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCC 97454 || | ||| |||||||||||||| || || || || || Sbjct 3647452 TGACGCCACTGGAATCCATAAACCGGACCCAGATCCCC 3647415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346726816402100