Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq3603 105 1e-17
seq3289 93.3 6e-14
>seq3603
Length=2672878
Score = 105 bits (116), Expect = 1e-17
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | || || || || ||||| || || || | ||| | || |
Sbjct 316130 AATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTC 316189
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || || ||| | || ||||| ||||| ||||||||||| ||||| |||||
Sbjct 316190 TGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 316249
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | || || ||||| || || || | |||||| | || || | || || ||
Sbjct 316250 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAA 316309
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
|||||||| || || |||||||| ||||| | ||| | || ||||||||||
Sbjct 316310 CATTCAAAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGGTATTA 316362
>seq3289
Length=20206255
Score = 93.3 bits (102), Expect = 6e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594
||| |||||||| ||| |||| || || || || || || || ||| | ||| | ||| |
Sbjct 14369798 TACGATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACC 14369739
Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654
||||| || ||| | ||| || || || || |||||||| || || || ||
Sbjct 14369738 GTCGGATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGA 14369679
Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714
||| || | | ||||| || || || || || || ||| |||| || | || ||
Sbjct 14369678 TCAGCAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTA 14369619
Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
||||| || ||||| || |||||||||||||| | || | || |||||
Sbjct 14369618 CAATATCCAGAAAGAGTCTACTTTGCATTTGGTGCTCCGCCTGCGTGGTGG 14369568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755328233504000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |