Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3603 134 1e-26
seq3378 113 4e-20
seq359 111 1e-19
seq3289 104 2e-17
seq466 102 7e-17
seq3134 87.8 2e-12
>seq3603
Length=2672878
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | || ||||||||| | || ||||| |||||||||||||| ||
Sbjct 316359 TACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCG 316300
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||||| |||||| ||||| || || || |||| |||||||||||||| || |
Sbjct 316299 AAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTG 316240
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || || |||||| ||||| || || | |||| |||||| | | |||||
Sbjct 316239 GAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 316180
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | ||| | || |||||||| || ||||| ||||| || |||||
Sbjct 316179 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131
>seq3378
Length=5191987
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || || |||||||| ||| || ||| || ||||||
Sbjct 4216891 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4216832
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| ||||| ||| |||| | |||||||||||| || || || |||||||||||
Sbjct 4216831 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4216772
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || ||||| | || | ||| || | ||| ||||| | ||| | || ||
Sbjct 4216771 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4216712
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||| || || || || ||||||||
Sbjct 4216711 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || ||||||||||| ||| || ||| || ||||||
Sbjct 4218030 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATCCTCC 4217971
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || ||| |||| | |||||||||||| || || || |||||||||||
Sbjct 4217970 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 4217911
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || ||||| | || | ||| || | ||| ||||| | ||| | || |||
Sbjct 4217910 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 4217851
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| |||| || || || || |||||||||
Sbjct 4217850 CCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || || |||||||| ||| || ||| || ||||||
Sbjct 4217575 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4217516
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| |||| | |||||||||||| || || || |||||||||||
Sbjct 4217515 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4217456
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || ||||| | || | ||| || | ||| ||||| | ||| | || ||
Sbjct 4217455 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4217396
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| |||| || || || || |||||||||
Sbjct 4217395 GCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217365
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||| || ||||| |||||| | ||| || |||
Sbjct 4217106 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCA 4217047
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||||||| || || |||||||||||||| || || |||
Sbjct 4217046 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTA 4216987
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||| || | ||| ||||| | ||| | || ||||| |||| ||
Sbjct 4216986 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4216927
Query 118722 TTTACAAAAATCTGCATG 118739
|| || || |||||||||
Sbjct 4216926 TTGACGAAGATCTGCATG 4216909
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||| || ||||| |||||| | ||| || |||
Sbjct 4217790 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCA 4217731
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||||||| || || |||||||||||||| || || |||
Sbjct 4217730 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTA 4217671
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||| || | ||| ||||| | ||| | || ||||| |||| ||
Sbjct 4217670 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4217611
Query 118722 TTTACAAAAATCTGCATG 118739
|| || || |||||||||
Sbjct 4217610 TTGACGAAGATCTGCATG 4217593
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||| || ||||| |||||| | ||| || |||
Sbjct 4217334 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCA 4217275
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||||||| || || || ||||||||||| || || |||
Sbjct 4217274 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 4217215
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||| || | ||| ||||| | ||| | || ||||| |||| ||
Sbjct 4217214 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATAGTCTTGCCAGTCAAGGTC 4217155
Query 118722 TTTACAAAAATCTGCATG 118739
|| || || |||||||||
Sbjct 4217154 TTGACGAAGATCTGCATG 4217137
>seq359
Length=456481
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| || | |||||| ||| ||
Sbjct 66100 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 66041
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || || ||| |||| ||||||||||| || ||||| || ||||||||||||
Sbjct 66040 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 65981
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| || || | ||| ||||| | ||| | || ||
Sbjct 65980 ATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTT 65921
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| ||||||||| || ||||||||
Sbjct 65920 CCCGTCAAAGTTTTTACGAAGATCTGCAT 65892
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||||| || || || || || ||||||||||| || ||||| ||| ||
Sbjct 66557 CACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTC 66498
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|| || || || || |||| ||||||||||| || ||||| || |||||||||||
Sbjct 66497 CAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTG 66438
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | || | ||| || | ||| ||||| | || | || ||
Sbjct 66437 AATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTT 66378
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || || ||||||||
Sbjct 66377 TCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||||| || ||||| || || || ||||| || | |||||| ||| ||
Sbjct 66785 CACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTC 66726
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|| || || || || |||| ||||||||||| || ||||| |||||||||||||||
Sbjct 66725 CAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 66666
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| || || | ||| ||||| | || | || ||
Sbjct 66665 GATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTT 66606
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || || ||||||||
Sbjct 66605 TCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || || ||||| || | |||||| ||| ||
Sbjct 66328 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCC 66269
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || || ||| |||| ||||||||||| || ||||| || ||||||||||||
Sbjct 66268 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 66209
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| || || | ||| ||||| | || | || ||
Sbjct 66208 ATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTT 66149
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || || ||||||||
Sbjct 66148 CCCGTCAGGGTCTTCACGAAGATCTGCAT 66120
>seq3289
Length=20206255
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
|||||| || | ||||||||||| || || ||||| || | ||||| ||| ||
Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 14369644
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| || |||||| | || | |||||||||||| ||||| || || || |||||
Sbjct 14369645 CAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14369704
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || |||||| | |||| ||| |||| |||||||| | || | || ||
Sbjct 14369705 GATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14369764
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || |||||||||||||| |||||
Sbjct 14369765 ACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794
>seq466
Length=100518
Score = 102 bits (112), Expect = 7e-17
Identities = 223/333 (67%), Gaps = 17/333 (5%)
Strand=Plus/Minus
Query 133224 TTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGT 133283
|| || ||||||||||| |||| | || ||||| ||| | || || ||| | ||
Sbjct 42744 TTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGC 42685
Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343
||||| || || |||||||| | ||| ||||| || | || ||||||||| || |
Sbjct 42684 TCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATT 42625
Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC 133403
| |||||||||||| || |||| || |||||| | | | | | |||||||||
Sbjct 42624 AGCAAAGAGTTTCTAACACCGTGCTGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAA 42565
Query 133404 AGAT-TGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACC 133462
|||| |||||| |||| | |||| | | | | | || |||| ||
Sbjct 42564 AGATCTGTTGG--TGAT-----CTGTTC---------CACATATCATACTGTAAAACTCC 42521
Query 133463 CCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCA 133522
| |||| || ||||| | | || | |||||| || || | | |||| || || ||
Sbjct 42520 CTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACA 42461
Query 133523 GCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTC 133555
||||| |||||||| || ||||||| |||||
Sbjct 42460 ACTAGCTTCCAAAGCTCCATAGTAAATAGTTTC 42428
>seq3134
Length=2474545
Score = 87.8 bits (96), Expect = 2e-12
Identities = 172/248 (69%), Gaps = 10/248 (4%)
Strand=Plus/Plus
Query 45069 TCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCG--AATCGTT 45126
||||||| || || |||| || ||| ||| || |||| || ||||| | ||| ||
Sbjct 573958 TCTCCGATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGCACTGCCGGTCAAT--TT 574015
Query 45127 GGTGGGAATGAAC-GCGAA--TATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCT 45183
| | || ||||| ||| | |||| | ||| || ||||||||||| |||||||||||
Sbjct 574016 GATCGGCATGAATTGCGCACTTATG-TCCGAA--TATATTGAGTTTGTGGCCGATCGTCT 574072
Query 45184 TCTCGTCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAA 45243
|| || | | | ||| ||||| | || |||| || || || ||| |
Sbjct 574073 GCTGGTTGAACTTGGGGTCGGCAAACTGTACAACACAAAGAATCCGTTTACATTCATGGA 574132
Query 45244 CAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAGCG 45303
| ||||||||||| |||||||| ||||| ||||||||| || |||||||| ||||
Sbjct 574133 AATGATTTCGTTGGACGGCAAAACCAATTTCTTTGAGAAAAAAGTGGGCGAATATCAGCG 574192
Query 45304 TTTCGGCG 45311
| ||||
Sbjct 574193 AATGGGCG 574200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433758862722760
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