Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3603 134 1e-26 seq3378 113 4e-20 seq359 111 1e-19 seq3289 104 2e-17 seq466 102 7e-17 seq3134 87.8 2e-12 >seq3603 Length=2672878 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||| | || ||||| |||||||||||||| || Sbjct 316359 TACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCG 316300 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| |||||| ||||| || || || |||| |||||||||||||| || | Sbjct 316299 AAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTG 316240 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| || || | |||| |||||| | | ||||| Sbjct 316239 GAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 316180 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || |||||||| || ||||| ||||| || ||||| Sbjct 316179 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131 >seq3378 Length=5191987 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| || ||| || |||||| Sbjct 4216891 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4216832 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| ||| |||| | |||||||||||| || || || ||||||||||| Sbjct 4216831 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4216772 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | || | ||| || | ||| ||||| | ||| | || || Sbjct 4216771 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4216712 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || || |||||||| Sbjct 4216711 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || ||||||||||| ||| || ||| || |||||| Sbjct 4218030 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATCCTCC 4217971 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| | |||||||||||| || || || ||||||||||| Sbjct 4217970 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 4217911 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | || | ||| || | ||| ||||| | ||| | || ||| Sbjct 4217910 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 4217851 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || || ||||||||| Sbjct 4217850 CCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| || ||| || |||||| Sbjct 4217575 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4217516 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| | |||||||||||| || || || ||||||||||| Sbjct 4217515 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4217456 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | || | ||| || | ||| ||||| | ||| | || || Sbjct 4217455 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4217396 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| || || || || ||||||||| Sbjct 4217395 GCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217365 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||||| |||||| | ||| || ||| Sbjct 4217106 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCA 4217047 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||||||| || || |||||||||||||| || || ||| Sbjct 4217046 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTA 4216987 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||| ||||| | ||| | || ||||| |||| || Sbjct 4216986 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4216927 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 4216926 TTGACGAAGATCTGCATG 4216909 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||||| |||||| | ||| || ||| Sbjct 4217790 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCA 4217731 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||||||| || || |||||||||||||| || || ||| Sbjct 4217730 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTA 4217671 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||| ||||| | ||| | || ||||| |||| || Sbjct 4217670 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 4217611 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 4217610 TTGACGAAGATCTGCATG 4217593 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||||| |||||| | ||| || ||| Sbjct 4217334 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCA 4217275 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||||||| || || || ||||||||||| || || ||| Sbjct 4217274 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 4217215 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||| ||||| | ||| | || ||||| |||| || Sbjct 4217214 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATAGTCTTGCCAGTCAAGGTC 4217155 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 4217154 TTGACGAAGATCTGCATG 4217137 >seq359 Length=456481 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| || | |||||| ||| || Sbjct 66100 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 66041 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| ||||||||||| || ||||| || |||||||||||| Sbjct 66040 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 65981 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || || | ||| ||||| | ||| | || || Sbjct 65980 ATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTT 65921 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||||||| || |||||||| Sbjct 65920 CCCGTCAAAGTTTTTACGAAGATCTGCAT 65892 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || || || || || ||||||||||| || ||||| ||| || Sbjct 66557 CACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTC 66498 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || || || |||| ||||||||||| || ||||| || ||||||||||| Sbjct 66497 CAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTG 66438 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | ||| || | ||| ||||| | || | || || Sbjct 66437 AATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTT 66378 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 66377 TCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || || ||||| || | |||||| ||| || Sbjct 66785 CACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTC 66726 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || || || |||| ||||||||||| || ||||| ||||||||||||||| Sbjct 66725 CAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 66666 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| || || | ||| ||||| | || | || || Sbjct 66665 GATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTT 66606 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 66605 TCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || || ||||| || | |||||| ||| || Sbjct 66328 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCC 66269 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| ||||||||||| || ||||| || |||||||||||| Sbjct 66268 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 66209 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || || | ||| ||||| | || | || || Sbjct 66208 ATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTT 66149 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 66148 CCCGTCAGGGTCTTCACGAAGATCTGCAT 66120 >seq3289 Length=20206255 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||||||||||| || || ||||| || | ||||| ||| || Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 14369644 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| | || | |||||||||||| ||||| || || || ||||| Sbjct 14369645 CAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14369704 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || |||||| | |||| ||| |||| |||||||| | || | || || Sbjct 14369705 GATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14369764 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||||||||| ||||| Sbjct 14369765 ACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq466 Length=100518 Score = 102 bits (112), Expect = 7e-17 Identities = 223/333 (67%), Gaps = 17/333 (5%) Strand=Plus/Minus Query 133224 TTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGT 133283 || || ||||||||||| |||| | || ||||| ||| | || || ||| | || Sbjct 42744 TTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGC 42685 Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343 ||||| || || |||||||| | ||| ||||| || | || ||||||||| || | Sbjct 42684 TCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATT 42625 Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC 133403 | |||||||||||| || |||| || |||||| | | | | | ||||||||| Sbjct 42624 AGCAAAGAGTTTCTAACACCGTGCTGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAA 42565 Query 133404 AGAT-TGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACC 133462 |||| |||||| |||| | |||| | | | | | || |||| || Sbjct 42564 AGATCTGTTGG--TGAT-----CTGTTC---------CACATATCATACTGTAAAACTCC 42521 Query 133463 CCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCA 133522 | |||| || ||||| | | || | |||||| || || | | |||| || || || Sbjct 42520 CTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACA 42461 Query 133523 GCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTC 133555 ||||| |||||||| || ||||||| ||||| Sbjct 42460 ACTAGCTTCCAAAGCTCCATAGTAAATAGTTTC 42428 >seq3134 Length=2474545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 172/248 (69%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 45069 TCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCG--AATCGTT 45126 ||||||| || || |||| || ||| ||| || |||| || ||||| | ||| || Sbjct 573958 TCTCCGATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGCACTGCCGGTCAAT--TT 574015 Query 45127 GGTGGGAATGAAC-GCGAA--TATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCT 45183 | | || ||||| ||| | |||| | ||| || ||||||||||| ||||||||||| Sbjct 574016 GATCGGCATGAATTGCGCACTTATG-TCCGAA--TATATTGAGTTTGTGGCCGATCGTCT 574072 Query 45184 TCTCGTCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAA 45243 || || | | | ||| ||||| | || |||| || || || ||| | Sbjct 574073 GCTGGTTGAACTTGGGGTCGGCAAACTGTACAACACAAAGAATCCGTTTACATTCATGGA 574132 Query 45244 CAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAGCG 45303 | ||||||||||| |||||||| ||||| ||||||||| || |||||||| |||| Sbjct 574133 AATGATTTCGTTGGACGGCAAAACCAATTTCTTTGAGAAAAAAGTGGGCGAATATCAGCG 574192 Query 45304 TTTCGGCG 45311 | |||| Sbjct 574193 AATGGGCG 574200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433758862722760