Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3603 102 9e-17 seq3289 100 3e-16 seq3191 96.9 4e-15 seq359 96.9 4e-15 seq3385 91.5 2e-13 >seq3603 Length=2672878 Score = 102 bits (112), Expect = 9e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| ||||| || |||||||||||| ||||| || | || || || | Sbjct 316346 ACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCC 316287 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || |||||||| || | || | | || || Sbjct 316286 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTT 316227 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| |||| || | | ||||| | || || || | ||||| Sbjct 316226 GTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGAT 316167 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| ||||| || || || || ||||||||||||||||| Sbjct 316166 GGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTT 316128 >seq3289 Length=20206255 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6062970 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 6063029 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 6063030 TACTACCGAGGAT 6063042 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/113 (81%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 60034 ATAACAACAAATTAACGT-TTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGT 60092 |||| || ||| ||| | || |||| | |||||| || | |||||| |||||| ||| Sbjct 5697019 ATAAGAAAAAAATAAGCTATTTTGAACA---TTCTCCCCGACGGGGAATTGAACCCCGGT 5696963 Query 60093 CTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA--TTGAAT 60143 |||||||||||||||||| ||||| |||||||||||| |||||| |||||| Sbjct 5696962 CTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGGATGTTGAAT 5696910 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 5697373 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 5697432 Query 60123 CTATACTACCGAGGA--TTGAA 60142 |||||||| |||||| ||||| Sbjct 5697433 CTATACTATCGAGGACGTTGAA 5697454 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 5698255 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 5698314 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 5698315 CTATACTATCGAGGA 5698329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||||||||| || ||| || || |||||||| |||| || || || | || || Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 14369644 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | |||||| |||||||| || | |||||||| || | || | | || |||||| Sbjct 14369645 CAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14369704 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || ||| | || | | || || || ||| || || | |||||||| || Sbjct 14369705 GATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14369764 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || |||||||| |||||||| Sbjct 14369765 ACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5687631 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5687572 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 5687571 ATACTATCGAGGAT 5687558 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5972894 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5972953 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 5972954 ATACTATCGAGGAT 5972967 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 6063908 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 6063967 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 6063968 ATACTATCGAGGAT 6063981 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 6064225 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 6064284 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 6064285 ATACTATCGAGGAT 6064298 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5687935 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5687994 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 5687995 ATACTATCGAGGA 5688007 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5697852 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5697911 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 5697912 ATACTATCGAGGA 5697924 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6063584 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 6063525 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 6063524 TACTATCGAGGAT 6063512 >seq3191 Length=20611582 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4017937 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 4017996 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||||||| Sbjct 4017997 TACTATCGAGGATTGA 4018012 >seq359 Length=456481 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| || |||||||| |||| ||||| || | Sbjct 66791 ACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACC 66732 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||| || || || || || ||||||||||| | || | || |||||| Sbjct 66731 ATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTT 66672 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| || | | ||| ||| | ||||| || | || || Sbjct 66671 GTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAAT 66612 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || ||||| || ||||| || ||||| ||||| Sbjct 66611 GGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| |||| ||||| || | || || || ||||| || ||||| Sbjct 66311 CTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAA 66252 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | ||||||||| ||| || |||| | Sbjct 66251 GATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 66192 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||| ||| | ||||| || | || ||||| || ||||| || ||||| || Sbjct 66191 CTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCAC 66132 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 66131 GAAGATCTGCAT 66120 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||||| || | || || || ||||| || ||||| Sbjct 66083 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAA 66024 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | ||||||||| ||| || || | | Sbjct 66023 GATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTT 65964 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||| ||| | ||||| || | |||||||| || ||||| | || ||||| Sbjct 65963 CTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTTAC 65904 Query 43172 AAAGATTTGCATTTT 43186 ||||| |||||||| Sbjct 65903 GAAGATCTGCATTTT 65889 >seq3385 Length=25233164 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 12646403 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 12646344 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 12646343 ATACTATCGAGGA 12646331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571720891348400