Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq3603 102 9e-17
seq3289 100 3e-16
seq3191 96.9 4e-15
seq359 96.9 4e-15
seq3385 91.5 2e-13
>seq3603
Length=2672878
Score = 102 bits (112), Expect = 9e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||||| ||||| || |||||||||||| ||||| || | || || || |
Sbjct 316346 ACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCC 316287
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| || || || || || |||||||| || | || | | || ||
Sbjct 316286 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTT 316227
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| |||||| |||| || | | ||||| | || || || | |||||
Sbjct 316226 GTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGAT 316167
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
||| ||||| || || || || |||||||||||||||||
Sbjct 316166 GGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTT 316128
>seq3289
Length=20206255
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 6062970 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 6063029
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 6063030 TACTACCGAGGAT 6063042
Score = 96.9 bits (106), Expect = 4e-15
Identities = 91/113 (81%), Gaps = 6/113 (5%)
Strand=Plus/Minus
Query 60034 ATAACAACAAATTAACGT-TTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGT 60092
|||| || ||| ||| | || |||| | |||||| || | |||||| |||||| |||
Sbjct 5697019 ATAAGAAAAAAATAAGCTATTTTGAACA---TTCTCCCCGACGGGGAATTGAACCCCGGT 5696963
Query 60093 CTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA--TTGAAT 60143
|||||||||||||||||| ||||| |||||||||||| |||||| ||||||
Sbjct 5696962 CTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGGATGTTGAAT 5696910
Score = 96.9 bits (106), Expect = 4e-15
Identities = 71/82 (87%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 5697373 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 5697432
Query 60123 CTATACTACCGAGGA--TTGAA 60142
|||||||| |||||| |||||
Sbjct 5697433 CTATACTATCGAGGACGTTGAA 5697454
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 5698255 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 5698314
Query 60123 CTATACTACCGAGGA 60137
|||||||| ||||||
Sbjct 5698315 CTATACTATCGAGGA 5698329
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||||||||||| || ||| || || |||||||| |||| || || || | || ||
Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 14369644
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
| |||||| |||||||| || | |||||||| || | || | | || ||||||
Sbjct 14369645 CAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14369704
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
||| || ||| | || | | || || || ||| || || | |||||||| ||
Sbjct 14369705 GATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14369764
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || || |||||||| ||||||||
Sbjct 14369765 ACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 5687631 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5687572
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 5687571 ATACTATCGAGGAT 5687558
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 5972894 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5972953
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 5972954 ATACTATCGAGGAT 5972967
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 6063908 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 6063967
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 6063968 ATACTATCGAGGAT 6063981
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 6064225 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 6064284
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 6064285 ATACTATCGAGGAT 6064298
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 5687935 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5687994
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 5687995 ATACTATCGAGGA 5688007
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 5697852 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5697911
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 5697912 ATACTATCGAGGA 5697924
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 6063584 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 6063525
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 6063524 TACTATCGAGGAT 6063512
>seq3191
Length=20611582
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 4017937 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 4017996
Query 60126 TACTACCGAGGATTGA 60141
||||| ||||||||||
Sbjct 4017997 TACTATCGAGGATTGA 4018012
>seq359
Length=456481
Score = 96.9 bits (106), Expect = 4e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | |||||| || | || |||||| || |||||||| |||| ||||| || |
Sbjct 66791 ACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACC 66732
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || || ||||| || || || || || ||||||||||| | || | || ||||||
Sbjct 66731 ATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTT 66672
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| || | | ||| ||| | ||||| || | || ||
Sbjct 66671 GTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAAT 66612
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || ||||| || ||||| || ||||| |||||
Sbjct 66611 GGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || |||||||| |||| ||||| || | || || || ||||| || |||||
Sbjct 66311 CTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAA 66252
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | | ||||||||| ||| || |||| |
Sbjct 66251 GATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 66192
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | ||| ||| | ||||| || | || ||||| || ||||| || ||||| ||
Sbjct 66191 CTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCAC 66132
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 66131 GAAGATCTGCAT 66120
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| |||| ||||| || | || || || ||||| || |||||
Sbjct 66083 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAA 66024
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | | ||||||||| ||| || || | |
Sbjct 66023 GATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTT 65964
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | ||| ||| | ||||| || | |||||||| || ||||| | || |||||
Sbjct 65963 CTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTTAC 65904
Query 43172 AAAGATTTGCATTTT 43186
||||| ||||||||
Sbjct 65903 GAAGATCTGCATTTT 65889
>seq3385
Length=25233164
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 12646403 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 12646344
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 12646343 ATACTATCGAGGA 12646331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571720891348400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |