Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq3378 116 2e-21
seq3289 111 1e-19
seq359 95.1 8e-15
>seq3378
Length=5191987
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| ||||| | ||| |||| ||| ||||| || ||||| |||||||||||||||
Sbjct 4218048 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4217989
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| ||| | || |||| ||||||||| ||||| || | |||||||| || |||
Sbjct 4217988 AAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217929
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | || | ||||| | || ||
Sbjct 4217928 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACC 4217869
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || | || || || |||||||||||
Sbjct 4217868 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217822
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||| ||| ||||| || ||||| |||||||||||||||
Sbjct 4217592 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4217533
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| ||| | || |||| ||||||||| ||||| || | |||||||| || |||
Sbjct 4217532 AAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217473
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | || | ||||| | || ||
Sbjct 4217472 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACC 4217413
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || | || || || |||||||||||
Sbjct 4217412 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217366
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||| ||| ||||| || ||||| |||||||||||||||
Sbjct 4216908 CCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4216849
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| ||| | || |||| |||||| || ||||| || | |||||||| || |||
Sbjct 4216848 AAAGTACGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4216789
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | || | ||||| | || ||
Sbjct 4216788 ATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACC 4216729
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || | || || || |||||||||||
Sbjct 4216728 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || ||||| || | || || ||||| |||||||||||||||
Sbjct 4217136 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4217077
Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
| | || || | || |||||||||||||| ||||| || | |||||||| || |||
Sbjct 4217076 AAGGTG-CGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 4217018
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | || | || | ||||| | || ||
Sbjct 4217017 AATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4216958
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || | || || || |||||||||||
Sbjct 4216957 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216910
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || ||||| || | || || ||||| |||||||||||||||
Sbjct 4217820 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4217761
Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
| | || || | || |||||||||||||| ||||| || | |||||||| || |||
Sbjct 4217760 AAGGTG-CGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 4217702
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | || | || | ||||| | || ||
Sbjct 4217701 AATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217642
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || | || || || |||||||||||
Sbjct 4217641 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217594
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || ||||| || | || || ||||| |||||||||||||||
Sbjct 4217364 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4217305
Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
| | || || | || |||||||||||||| ||||| || | |||||||| || |||
Sbjct 4217304 AAGGTG-CGTCCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 4217246
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| ||||| ||| | || | || | ||||| | || ||
Sbjct 4217245 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217186
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||| || ||||| || | || || || |||||||||||
Sbjct 4217185 CTCCAAGGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217138
>seq3289
Length=20206255
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||| || |||||| |||||||| || |||||||| ||
Sbjct 14369568 CCACCACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAA 14369627
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||||||||||||| |||||||| | |||||||| || ||
Sbjct 14369628 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGA 14369687
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | || ||||| ||| || ||||| | || | || | ||| | || ||||||
Sbjct 14369688 ATTCCTTCTTTGTCCTGGATC-TTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGAC 14369746
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391
|| | |||||||| || || ||||| ||||| ||||| || |||||||
Sbjct 14369747 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCATCG 14369796
>seq359
Length=456481
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || |||| ||| | || || ||||| ||||||||||| ||
Sbjct 66118 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 66059
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||||| ||||| || || ||||||||||| ||
Sbjct 66058 AGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 65999
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | |||| ||||| | || ||
Sbjct 65998 ATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACC 65939
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| || || || | |||||| || |||||||||||
Sbjct 65938 TCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 65892
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||| ||| | || || ||||| || |||||||| ||
Sbjct 66802 CCACCACGCAGACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAG 66743
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||||| || || || || ||||||||||| ||
Sbjct 66742 AGAGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGA 66683
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | |||| ||||| | || ||
Sbjct 66682 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACC 66623
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || || || || || ||||| |||||||||||
Sbjct 66622 TCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || |||| ||| | || || ||||| || |||||||| ||
Sbjct 66346 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAG 66287
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||||| ||||| || || ||||||||||| ||
Sbjct 66286 AGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 66227
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | |||| ||||| | || ||
Sbjct 66226 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACC 66167
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || || || || || ||||| |||||||||||
Sbjct 66166 TCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66120
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||| ||| | || ||| ||||| |||||||| || |||
Sbjct 66574 CCACCACGCAGACGAAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGAC 66515
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| | || | || |||| |||||||| || || || || ||||||||||| ||
Sbjct 66514 AACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGG 66455
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | || | ||| | | || ||
Sbjct 66454 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACC 66395
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || || || || || ||||| |||||||||||
Sbjct 66394 TCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323018726436800
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