Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3134 190 2e-43 >seq3134 Length=2474545 Score = 190 bits (210), Expect = 2e-43 Identities = 581/890 (65%), Gaps = 6/890 (1%) Strand=Plus/Minus Query 15883 ACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT 15942 ||| || ||||| ||| || | ||||||||||||| |||||| | || ||| Sbjct 574253 ACTCTAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATTTGATGTGACGCCCAT 574194 Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 | |||||||| | ||| | || ||||||||||| ||||| || || || ||||| | Sbjct 574193 TCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCAT 574134 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 |||||| || ||| ||||| |||| || ||| || | ||||| | |||| | Sbjct 574133 TTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCG-ACCCCAAGTTCAACCA 574075 Query 16063 TAAT-CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | | ||| |||||||| || ||||| | ||| | | || ||||| || || | Sbjct 574074 GCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCA 574015 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | || || || | ||| || || | ||| | | ||| || |||| || || ||| | Sbjct 574014 AATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGA 573955 Query 16182 TATCTCTTACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | || | | | | || | | | ||| | | | || || | ||||| | |||| Sbjct 573954 TCTCAATGA-TGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACAGCA 573896 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 || || ||||||| ||| ||||| | || | ||||| || || || || || ||| Sbjct 573895 AAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGC 573836 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || || || || || || | |||||| |||| ||||| || |||||| || || Sbjct 573835 ATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCC 573776 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt-ttactttctatcca 16419 ||||| || |||||||| | | ||||| || | ||| | ||| |||||| Sbjct 573775 TCAACAGCAGCAAATGCGATGATGCGCTCCCCAAA-GTTAGCTGCCTTAGAGGATATCCA 573717 Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 ||||| | || || | ||||| ||| | || ||||||||||||| Sbjct 573716 AGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAG 573657 Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 ||||| | | ||| ||||| || || || || | || |||||||| || Sbjct 573656 ATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGA 573597 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 || | ||||||||| ||||||||||| ||||| ||||| | ||| || | || || || Sbjct 573596 GTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAAC 573537 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 ||| | ||| | || | | || |||||||| || |||||| || |||||||| Sbjct 573536 TTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAA 573477 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAA 16719 || || | ||| ||| |||| ||||| |||| || | |||||||| | Sbjct 573476 GGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCAGTCAGTCAG 573417 Query 16720 ATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 ||| || || | ||| || || || |||||||| || || || | |||| Sbjct 573416 ATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGCCT 573367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462433777658000