Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 190 2e-43
>seq3134
Length=2474545
Score = 190 bits (210), Expect = 2e-43
Identities = 581/890 (65%), Gaps = 6/890 (1%)
Strand=Plus/Minus
Query 15883 ACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT 15942
||| || ||||| ||| || | ||||||||||||| |||||| | || |||
Sbjct 574253 ACTCTAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATTTGATGTGACGCCCAT 574194
Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002
| |||||||| | ||| | || ||||||||||| ||||| || || || ||||| |
Sbjct 574193 TCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCAT 574134
Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062
|||||| || ||| ||||| |||| || ||| || | ||||| | |||| |
Sbjct 574133 TTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCG-ACCCCAAGTTCAACCA 574075
Query 16063 TAAT-CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121
| | ||| |||||||| || ||||| | ||| | | || ||||| || || |
Sbjct 574074 GCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCA 574015
Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181
| || || || | ||| || || | ||| | | ||| || |||| || || ||| |
Sbjct 574014 AATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGA 573955
Query 16182 TATCTCTTACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240
| || | | | | || | | | ||| | | | || || | ||||| | ||||
Sbjct 573954 TCTCAATGA-TGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACAGCA 573896
Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300
|| || ||||||| ||| ||||| | || | ||||| || || || || || |||
Sbjct 573895 AAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGC 573836
Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360
|| || || || || || | |||||| |||| ||||| || |||||| || ||
Sbjct 573835 ATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCC 573776
Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt-ttactttctatcca 16419
||||| || |||||||| | | ||||| || | ||| | ||| ||||||
Sbjct 573775 TCAACAGCAGCAAATGCGATGATGCGCTCCCCAAA-GTTAGCTGCCTTAGAGGATATCCA 573717
Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479
||||| | || || | ||||| ||| | || |||||||||||||
Sbjct 573716 AGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAG 573657
Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539
||||| | | ||| ||||| || || || || | || |||||||| ||
Sbjct 573656 ATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGA 573597
Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599
|| | ||||||||| ||||||||||| ||||| ||||| | ||| || | || || ||
Sbjct 573596 GTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAAC 573537
Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659
||| | ||| | || | | || |||||||| || |||||| || ||||||||
Sbjct 573536 TTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAA 573477
Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAA 16719
|| || | ||| ||| |||| ||||| |||| || | |||||||| |
Sbjct 573476 GGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCAGTCAGTCAG 573417
Query 16720 ATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769
||| || || | ||| || || || |||||||| || || || | ||||
Sbjct 573416 ATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGCCT 573367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462433777658000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |