Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3023 132 4e-26 >seq3023 Length=5802038 Score = 132 bits (146), Expect = 4e-26 Identities = 227/325 (70%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511 |||||||| || || | |||||||| |||||| ||||| || |||||||| ||||| Sbjct 3647655 GAATTGTCCTGCCAGCTATATCAACGCAGCGCTGACATGGGTCTCGGTGTTCCCTTCAAC 3647714 Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGT 20571 ||||| ||||| ||||| || ||| | || || ||||| || | | | || | ||| Sbjct 3647715 ATTGCCTCCTATGCTCTGCTCACTTATTTAATAGCCCATGTGACGGGTCTGAAGCCCGGT 3647774 Query 20572 GACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAA 20631 || || ||||||||||||| || || || |||| ||||| ||||||||||| | | Sbjct 3647775 GAATTCATCCACACCATAGGCGATGCTCACGTTTATCTTAACCATATAGAACCGCTGCAG 3647834 Query 20632 TTACAGTTAACACG-ACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAA 20690 ||| ||| ||| | |||| | ||||||| || ||||| || |||| Sbjct 3647835 CAGCAGATAAAACGTAGCCCCAAGCCTTTTCCCAA-GCTCAACATTAAGCGCCAGGTTAC 3647893 Query 20691 AGATATTAACGATTTTAAAGCT--GATGATTTTGTGTTAGAAGGTTATAATCCCCATAAT 20748 | |||| | || ||| ||| || ||||||| | | || || |||||| |||| Sbjct 3647894 AAATATCGAGGACTTT--TGCTACGAGGATTTTGAAATTGTTGGCTACAATCCCGATAAG 3647951 Query 20749 TCAATTCCAATGGAAATGTCTGTTT 20773 | ||||||||||| ||| | |||| Sbjct 3647952 GCGATTCCAATGGAGATGGCCGTTT 3647976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399118175805850