Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3134 167 2e-36 >seq3134 Length=2474545 Score = 167 bits (184), Expect = 2e-36 Identities = 567/875 (65%), Gaps = 10/875 (1%) Strand=Plus/Minus Query 13855 CTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13914 ||| ||||| |||| | | ||| |||||||| || || | ||||||||| Sbjct 574250 CTAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATTTGATGTGACGCCCATTCG 574191 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||||| | ||| |||| |||||||| || ||||| || |||| || || |||| Sbjct 574190 CTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTC 574131 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 ||| || ||| ||||| ||| | ||| ||| | || ||||| | || | Sbjct 574130 CATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGTTCAACCAGCAG 574071 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 | ||| || | ||||||||||||| ||||| | | |||||||| || || | || Sbjct 574070 ACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAAATT 574011 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 || || | | | || | ||| || | ||| || | ||||| ||| || || | Sbjct 574010 GACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGATC-T 573952 Query 14155 CGTAATAATT---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA-ACACGCAA 14210 | ||| || || | | ||| | | | ||| | || || | ||| |||| Sbjct 573951 C--AATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACA-GCAA 573895 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 | || ||||| || ||||| || | || |||||||| || || || | || |||| Sbjct 573894 AGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGCA 573835 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 | | || || || || | |||||| || | ||| || ||| |||||| || |||| Sbjct 573834 TAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCCT 573775 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390 |||| |||||||| || || | || || ||||| ||| || |||||||| Sbjct 573774 CAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGATATCCAAG 573715 Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450 ||||| || | || |||| |||||||||||| |||||||||| || Sbjct 573714 AAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAGAT 573655 Query 14451 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14510 || || | | | || ||||| ||||| || | ||| |||||||| |||| Sbjct 573654 AATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGAGT 573595 Query 14511 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14570 | | || ||||| ||||||||||| ||||| || || | ||| |||| || || | Sbjct 573594 GGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAACTT 573535 Query 14571 -CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14629 ||| ||||| | ||| ||| ||| || ||||| || ||||| || |||||||| Sbjct 573534 CCTGGCTAAAA-CGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAG 573476 Query 14630 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA 14689 |||| | | | ||| || | |||| | | | || | ||| || | | | Sbjct 573475 GCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCAGTCAGTCAGA 573416 Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 |||||||| ||||| ||||| || || ||||| || Sbjct 573415 TCCTTAGACAGATCCACTTCCTCCACAGTCCAGAA 573381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482264023300400