Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 167 2e-36
>seq3134
Length=2474545
Score = 167 bits (184), Expect = 2e-36
Identities = 567/875 (65%), Gaps = 10/875 (1%)
Strand=Plus/Minus
Query 13855 CTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13914
||| ||||| |||| | | ||| |||||||| || || | |||||||||
Sbjct 574250 CTAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATTTGATGTGACGCCCATTCG 574191
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
|||||||| | ||| |||| |||||||| || ||||| || |||| || || ||||
Sbjct 574190 CTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTC 574131
Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034
||| || ||| ||||| ||| | ||| ||| | || ||||| | || |
Sbjct 574130 CATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGTTCAACCAGCAG 574071
Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094
| ||| || | ||||||||||||| ||||| | | |||||||| || || | ||
Sbjct 574070 ACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAAATT 574011
Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154
|| || | | | || | ||| || | ||| || | ||||| ||| || || |
Sbjct 574010 GACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGATC-T 573952
Query 14155 CGTAATAATT---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA-ACACGCAA 14210
| ||| || || | | ||| | | | ||| | || || | ||| ||||
Sbjct 573951 C--AATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACA-GCAA 573895
Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270
| || ||||| || ||||| || | || |||||||| || || || | || ||||
Sbjct 573894 AGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGCA 573835
Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330
| | || || || || | |||||| || | ||| || ||| |||||| || ||||
Sbjct 573834 TAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCCT 573775
Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390
|||| |||||||| || || | || || ||||| ||| || ||||||||
Sbjct 573774 CAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGATATCCAAG 573715
Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450
||||| || | || |||| |||||||||||| |||||||||| ||
Sbjct 573714 AAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAGAT 573655
Query 14451 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14510
|| || | | | || ||||| ||||| || | ||| |||||||| ||||
Sbjct 573654 AATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGAGT 573595
Query 14511 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14570
| | || ||||| ||||||||||| ||||| || || | ||| |||| || || |
Sbjct 573594 GGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAACTT 573535
Query 14571 -CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14629
||| ||||| | ||| ||| ||| || ||||| || ||||| || ||||||||
Sbjct 573534 CCTGGCTAAAA-CGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAG 573476
Query 14630 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA 14689
|||| | | | ||| || | |||| | | | || | ||| || | | |
Sbjct 573475 GCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCAGTCAGTCAGA 573416
Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724
|||||||| ||||| ||||| || || ||||| ||
Sbjct 573415 TCCTTAGACAGATCCACTTCCTCCACAGTCCAGAA 573381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482264023300400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |