Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq466 569 3e-157
seq3134 293 3e-74
>seq466
Length=100518
Score = 569 bits (630), Expect = 3e-157
Identities = 1239/1843 (67%), Gaps = 34/1843 (2%)
Strand=Plus/Minus
Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126
|| ||||| || || ||||| ||||| || ||||| || || |||| |||||
Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003
Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186
|| || |||| ||| ||| | || || || | ||| ||||| | ||||||||||
Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943
Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246
||||| || || || || || || || |||||||| || | | |||| | || |||
Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883
Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGA 62302
|| | ||||| || || || | | | ||||| || | | || | |||| || || ||
Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGA 42824
Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362
||| | | | ||||| ||| || |||||||||| ||| || | ||| |||||
Sbjct 42823 TCCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAA 42764
Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422
| | | | | ||| || || || ||||| || || || |||||||||| | || ||
Sbjct 42763 ATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATA 42704
Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482
||| || || || || || | ||||||||| || |||| ||||| ||||| |||||
Sbjct 42703 AATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGC 42644
Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT---- 62538
|| ||||| || || | | ||| ||||||| ||||| ||| ||||||
Sbjct 42643 TGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGAC 42589
Query 62539 CTTTTA-GATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGT 62597
|||||| |||| ||||| | ||||||||| | ||| ||| |||
Sbjct 42588 CTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGT 42529
Query 62598 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGC 62656
| || || || || | | || ||| | ||| || ||||| || || ||||||| |
Sbjct 42528 AAAACTCCCTTGCTTACTGGACT-TCCAATATAGGTTTCATACGGGCCATCCTTCTTGGA 42470
Query 62657 TAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAG 62716
| || |||||| || || || || || || ||||| ||||||||||| | | ||| |
Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410
Query 62717 ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCC 62776
| |||||| ||| ||| | ||| | | | ||||| || || || || || ||
Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350
Query 62777 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62836
||| ||||||||||| ||||| | || | ||| || ||| || ||||| | ||
Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290
Query 62837 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62896
|||||| || ||||| || |||||||| || ||| || || | ||| ||||| ||
Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230
Query 62897 CAGTTTGAGAAAATCAAA-------TCGCCCATCTATTACAAACATGTTCAATGCAACAG 62949
|||||| || || | ||| || || ||||||||||| | || | |
Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTC----ACAAACATGTTTAGGGCTATTG 42174
Query 62950 ATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 63009
|||| | |||||| || |||| || | | | | ||| | | || || ||||| |
Sbjct 42173 ATGCTAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATA 42114
Query 63010 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63069
|||||| ||||| |||||||| | |||||||||||| || ||| ||||||||| || |
Sbjct 42113 AATTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTT 42054
Query 63070 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63129
|| |||| ||| | || |||||||| || | |||||||| || || || ||| |
Sbjct 42053 TAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAG 41994
Query 63130 CTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189
| ||||||| | || || | || || ||| |||| ||| ||||||| ||
Sbjct 41993 ATTGAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTT 41934
Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249
| || || || |||||||||| | || | || |||| | ||||||||||||||||
Sbjct 41933 CAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACC 41874
Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309
| || ||| | | || || ||||||||||||||||||||||| | || |||||
Sbjct 41873 AATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATA 41814
Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369
|||| | | | ||||||||| ||||| ||||| |||||||| || | || | | |
Sbjct 41813 GATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACA 41754
Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429
|| |||||||| || |||| ||| || || | |||| || | ||| || ||||
Sbjct 41753 CGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCT 41694
Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489
|||| | || | || || ||| | ||||| | |||||| | | || |||||
Sbjct 41693 GATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAG 41634
Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTA 63549
||||||| || ||||| ||| || || | || |||||| | || ||||| |
Sbjct 41633 TACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAA 41574
Query 63550 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTA 63609
| || |||||| ||| ||||| | |||||| | | || || | | | || ||||| |
Sbjct 41573 TGCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAA 41514
Query 63610 TGCTATCATCGAT--CA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666
| ||| |||| || |||||| |||||||| || | |||| |||| | ||
Sbjct 41513 TAGAATC--CGATGCCATTGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGG 41457
Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726
| ||| ||| | || || || || || ||||| | ||| || |||| ||| || |
Sbjct 41456 CAGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATG 41397
Query 63727 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786
| ||||| || || || ||||| ||| || || | |||||||||||||| |||||
Sbjct 41396 TTTCAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGT 41337
Query 63787 GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63846
|||| |||| ||| | |||||| || ||||| | ||| || ||| || | || |
Sbjct 41336 GCTGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCT 41277
Query 63847 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|||| ||||| || || ||| ||| || || || ||||| ||
Sbjct 41276 TAAATCCAAAGTAATTATATCCAAAATCACGATCATAAATTAT 41234
>seq3134
Length=2474545
Score = 293 bits (324), Expect = 3e-74
Identities = 573/839 (68%), Gaps = 11/839 (1%)
Strand=Plus/Minus
Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341
|| |||||| || ||||| ||||| ||| || || ||||| ||||| || |||||
Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142
Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401
|| || |||||||||| ||||||||| | ||||| | ||| | || | |
Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082
Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461
||| | || | ||| || || || || |||||| ||| | | | ||||||||
Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022
Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521
|| || | || || || || || |||||||||| || |||||||||| || ||||
Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962
Query 33522 GTTATAATA--AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCA 33579
| || || ||| || | ||| || || | || | ||||| | |||||||
Sbjct 573961 GAGATGATCTCAATGATGCGCTCTCTGCAG--GGACGCTGCACCAAATGCTGGAACATCA 573904
Query 33580 A-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638
||| || || ||||| ||||| |||||||| | || | |||||| || || |||
Sbjct 573903 GGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTG 573845
Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698
|| |||||||| ||||||||||| || |||||||| || ||||| || ||| ||||
Sbjct 573844 AGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAG 573785
Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCA 33755
||||| || || || |||||||| || || | | ||| ||| | | | || || |
Sbjct 573784 AAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC-CTTAGA 573726
Query 33756 TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
| |||||| | ||||| ||||||||| || || ||||| ||||| || ||
Sbjct 573725 GGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGC 573666
Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874
|||||| ||||| | | || ||| | ||| || || |||| | || ||
Sbjct 573665 ATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTA 573606
Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934
||||||||| || | || || ||||| |||||||| || ||||| || | |||||| ||
Sbjct 573605 CATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGT 573546
Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994
|||||| ||||| | ||| || || | | ||| || || || || ||||| |||
Sbjct 573545 AATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGC 573486
Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054
|||||||| |||| |||||| || |||| |||| |||||| |||
Sbjct 573485 GGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCA 573426
Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
||| | | ||| ||||| | ||||||||| ||||| ||||| ||||||||||| ||||
Sbjct 573425 GTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGCCT 573367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629711082098400
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