Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq466 569 3e-157 seq3134 293 3e-74 >seq466 Length=100518 Score = 569 bits (630), Expect = 3e-157 Identities = 1239/1843 (67%), Gaps = 34/1843 (2%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| || || ||||| ||||| || ||||| || || |||| ||||| Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || |||| ||| ||| | || || || | ||| ||||| | |||||||||| Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| || || || || || || || |||||||| || | | |||| | || ||| Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGA 62302 || | ||||| || || || | | | ||||| || | | || | |||| || || || Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGA 42824 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 ||| | | | ||||| ||| || |||||||||| ||| || | ||| ||||| Sbjct 42823 TCCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAA 42764 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | | | | | ||| || || || ||||| || || || |||||||||| | || || Sbjct 42763 ATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATA 42704 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 ||| || || || || || | ||||||||| || |||| ||||| ||||| ||||| Sbjct 42703 AATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGC 42644 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT---- 62538 || ||||| || || | | ||| ||||||| ||||| ||| |||||| Sbjct 42643 TGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGAC 42589 Query 62539 CTTTTA-GATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGT 62597 |||||| |||| ||||| | ||||||||| | ||| ||| ||| Sbjct 42588 CTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGT 42529 Query 62598 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGC 62656 | || || || || | | || ||| | ||| || ||||| || || ||||||| | Sbjct 42528 AAAACTCCCTTGCTTACTGGACT-TCCAATATAGGTTTCATACGGGCCATCCTTCTTGGA 42470 Query 62657 TAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAG 62716 | || |||||| || || || || || || ||||| ||||||||||| | | ||| | Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410 Query 62717 ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCC 62776 | |||||| ||| ||| | ||| | | | ||||| || || || || || || Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350 Query 62777 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62836 ||| ||||||||||| ||||| | || | ||| || ||| || ||||| | || Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290 Query 62837 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62896 |||||| || ||||| || |||||||| || ||| || || | ||| ||||| || Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230 Query 62897 CAGTTTGAGAAAATCAAA-------TCGCCCATCTATTACAAACATGTTCAATGCAACAG 62949 |||||| || || | ||| || || ||||||||||| | || | | Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTC----ACAAACATGTTTAGGGCTATTG 42174 Query 62950 ATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 63009 |||| | |||||| || |||| || | | | | ||| | | || || ||||| | Sbjct 42173 ATGCTAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATA 42114 Query 63010 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63069 |||||| ||||| |||||||| | |||||||||||| || ||| ||||||||| || | Sbjct 42113 AATTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTT 42054 Query 63070 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63129 || |||| ||| | || |||||||| || | |||||||| || || || ||| | Sbjct 42053 TAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAG 41994 Query 63130 CTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189 | ||||||| | || || | || || ||| |||| ||| ||||||| || Sbjct 41993 ATTGAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTT 41934 Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249 | || || || |||||||||| | || | || |||| | |||||||||||||||| Sbjct 41933 CAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACC 41874 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 | || ||| | | || || ||||||||||||||||||||||| | || ||||| Sbjct 41873 AATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATA 41814 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 |||| | | | ||||||||| ||||| ||||| |||||||| || | || | | | Sbjct 41813 GATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACA 41754 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429 || |||||||| || |||| ||| || || | |||| || | ||| || |||| Sbjct 41753 CGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCT 41694 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489 |||| | || | || || ||| | ||||| | |||||| | | || ||||| Sbjct 41693 GATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAG 41634 Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTA 63549 ||||||| || ||||| ||| || || | || |||||| | || ||||| | Sbjct 41633 TACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAA 41574 Query 63550 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTA 63609 | || |||||| ||| ||||| | |||||| | | || || | | | || ||||| | Sbjct 41573 TGCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAA 41514 Query 63610 TGCTATCATCGAT--CA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | ||| |||| || |||||| |||||||| || | |||| |||| | || Sbjct 41513 TAGAATC--CGATGCCATTGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGG 41457 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | ||| ||| | || || || || || ||||| | ||| || |||| ||| || | Sbjct 41456 CAGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATG 41397 Query 63727 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 | ||||| || || || ||||| ||| || || | |||||||||||||| ||||| Sbjct 41396 TTTCAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGT 41337 Query 63787 GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63846 |||| |||| ||| | |||||| || ||||| | ||| || ||| || | || | Sbjct 41336 GCTGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCT 41277 Query 63847 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||| ||||| || || ||| ||| || || || ||||| || Sbjct 41276 TAAATCCAAAGTAATTATATCCAAAATCACGATCATAAATTAT 41234 >seq3134 Length=2474545 Score = 293 bits (324), Expect = 3e-74 Identities = 573/839 (68%), Gaps = 11/839 (1%) Strand=Plus/Minus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 || |||||| || ||||| ||||| ||| || || ||||| ||||| || ||||| Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || |||||||||| ||||||||| | ||||| | ||| | || | | Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 ||| | || | ||| || || || || |||||| ||| | | | |||||||| Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || | || || || || || |||||||||| || |||||||||| || |||| Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962 Query 33522 GTTATAATA--AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCA 33579 | || || ||| || | ||| || || | || | ||||| | ||||||| Sbjct 573961 GAGATGATCTCAATGATGCGCTCTCTGCAG--GGACGCTGCACCAAATGCTGGAACATCA 573904 Query 33580 A-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 ||| || || ||||| ||||| |||||||| | || | |||||| || || ||| Sbjct 573903 GGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTG 573845 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 || |||||||| ||||||||||| || |||||||| || ||||| || ||| |||| Sbjct 573844 AGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAG 573785 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCA 33755 ||||| || || || |||||||| || || | | ||| ||| | | | || || | Sbjct 573784 AAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC-CTTAGA 573726 Query 33756 TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | |||||| | ||||| ||||||||| || || ||||| ||||| || || Sbjct 573725 GGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGC 573666 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 |||||| ||||| | | || ||| | ||| || || |||| | || || Sbjct 573665 ATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTA 573606 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||||||||| || | || || ||||| |||||||| || ||||| || | |||||| || Sbjct 573605 CATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGT 573546 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 |||||| ||||| | ||| || || | | ||| || || || || ||||| ||| Sbjct 573545 AATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGC 573486 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 |||||||| |||| |||||| || |||| |||| |||||| ||| Sbjct 573485 GGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCA 573426 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||| | | ||| ||||| | ||||||||| ||||| ||||| ||||||||||| |||| Sbjct 573425 GTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGCCT 573367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629711082098400