Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq466 408 4e-109
>seq466
Length=100518
Score = 408 bits (452), Expect = 4e-109
Identities = 1226/1868 (66%), Gaps = 42/1868 (2%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || || |||| ||||| ||||| || | |||||| | | ||||||||| || |||
Sbjct 43089 TCTACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTT 43030
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || ||| | |||| ||||| || || || | |||| | || | || | |
Sbjct 43029 TTAAGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCA 42970
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
| | || || | | |||||||||||||| |||||||| ||||| || |||||||||
Sbjct 42969 GCAACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGCCATT 42910
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029
| | | | | ||| ||||||||||| || ||||| || | | || | ||
Sbjct 42909 TTAATAGTTGACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGGATTTCTTCG 42850
Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086
|||| | |||| || ||| ||||| || | | |||| ||| || || |||
Sbjct 42849 GGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCTCA 42790
Query 37087 TTATTCCACATATTT--CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144
| || ||||| || || | | || || | ||||| || ||||||||||| ||||
Sbjct 42789 TCATCCCACAAATCAAGCTCCGT--TAAATCACGCAATAAATGAGGATTTACAACTTGAA 42732
Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204
| || || || ||||||| ||||||||| || || ||| || || || | |||||||
Sbjct 42731 ACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGACTCAT 42672
Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264
| || | | |||||| | || ||||| || ||||| || || ||||| | ||||
Sbjct 42671 TGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAGTTTC 42612
Query 37265 TCAATCCATG-TGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG- 37322
| | || || ||| || || | |||| || | || ||| ||||| | |||||||||
Sbjct 42611 TAACACCGTGCTGT-TTTATGGACCTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGT 42553
Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382
| ||| | |||||||||||| |||| || || || || ||||| | |||| ||
Sbjct 42552 GATCTGT-TCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAATATAGGT 42494
Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442
||||| || || | | || | | ||| ||||||| ||| | || |||| || ||
Sbjct 42493 TTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCATAGTAAAT 42434
Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502
||||| || |||||| ||| || | |||||||||||| || | | | | | ||
Sbjct 42433 AGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAAACCTCAT 42374
Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562
| || || |||| || || || || ||||| ||||| || || | || |||
Sbjct 42373 CAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCCGTAAATT 42314
Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622
||| | | ||| || |||||||| || ||||| ||||||||||| || |||||
Sbjct 42313 TGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTTTATTCAGGTTTTT 42254
Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAA-ATACGTTATTATTAAC 37679
| ||||| || | | ||| || | ||| | ||| || | | ||
Sbjct 42253 GGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCAC 42194
Query 37680 AAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAA 37739
||| | | | | || ||| ||| |||||||||||| | ||| ||| | || ||
Sbjct 42193 AAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATTTCGTCT--GGCGCTGAA 42136
Query 37740 T--TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797
| | | ||| || || || | |||||| | | || ||||| | ||| |||||||
Sbjct 42135 TACTCAACAATTTCCGTGCATAAATTACTGCACTTTATAGTTCCAACATTTTGTTGATTG 42076
Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857
|||| | ||||| || |||||| | || || || || || || || | |||||
Sbjct 42075 CTTTTTCTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGAT 42016
Query 37858 TCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtttttt----tCTT 37913
|| || || | ||| | | | || ||||| | || ||| | | ||
Sbjct 42015 TCAATTATGGCAAACCAAAGAGATTGAGCCTTAACAA----TTCGATTCTGTCGCCCCTC 41960
Query 37914 TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC--GCATAATCCT 37971
| |||| |||| | ||| ||||| | ||| || | ||||| ||||| ||| | ||
Sbjct 41959 TTTTTCATATTTGACATACAATTTTTCAAATTCTTCACCCCAAACATCTTGCAGA--CCG 41902
Query 37972 GGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAAT 38031
|| |||| | ||||||||| | ||||| || || | ||| || || | ||||||
Sbjct 41901 GGGCATTTGTGTGGACACATCAACGACCAATCCTCGTTGGCTTCAACCCGCTTCATAAAG 41842
Query 38032 AAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACA 38091
| |||||| | ||| || ||| ||||| ||| | | || ||| || || || |
Sbjct 41841 AGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCCGATGTTCCTCTTTTCCAGTA 41782
Query 38092 TTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150
|| ||| ||||| | || ||| || || | || | ||||| || || | ||||| |
Sbjct 41781 TT-TTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCCAAGGCTCCAGGTAAATAGC 41723
Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210
| |||||||||||||||| |||| ||||||| | ||| | | || ||| |||
Sbjct 41722 GAATGCTCCTGGTCTTTTACCACCACCCTGATCGACATAGCGTGCCACATTGTTAAATAC 41663
Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270
||| | ||| ||||| | ||||| || | || ||| | ||||| ||| | || |||||
Sbjct 41662 TCTAAGCATTGGTACCAAGCCATTTGAAGTACCATTTGTGCCGGAAATAGAGGTGCCCTT 41603
Query 38271 AGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGC 38329
||||| ||| | | | | || || || || ||||| ||| || || | ||||
Sbjct 41602 TGCTCGAATA-CAATGAACATTAAGACCAATGCCTCCTGCCGATTTGGAGATCATTGCGC 41544
Query 38330 ATTGTTTTAACGTATCAAATATACCTTCTATACTGTC--ATCCTTTATTGGTAGTATAAA 38387
| || | || || | |||||| ||||| ||| || || | |||| || | |||
Sbjct 41543 ACTGCTCTACTGTTTTAAATATTCCTTCAATAGAATCCGATGC--CATTGTTAAAAGAAA 41486
Query 38388 ACAACTAGACATTTGAGGCAATGG--AGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445
||| || | ||| || | || || | || ||| | || || |||||||||
Sbjct 41485 ACATGATGATAATTGGGG--ACGGTTTGTGGCAGCAGCAAAAAGCGTTGGTGATGCATGT 41428
Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505
| || | |||||| | ||||||||||||| || || ||| |||||| | ||
Sbjct 41427 GTAAAATAACGTTCCGATAGTAAATTATATGTTTCAATCGCAGAATCAATATCATCACCA 41368
Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTC 38565
|| ||||| | | || | ||||||||| || ||||||| ||| |||||| |||
Sbjct 41367 TGTATACCAATTGCGACACGCATTAGCATGTGCTGTGGTCGTTCCGCTATTTTGCCATTA 41308
Query 38566 TGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCT 38625
|||||| | ||| ||| || | ||| || | |||||| ||| ||||| | ||||
Sbjct 41307 ATTTTAAGCAAATATGATCGCTCAAGTGTCTTAAATCCAAAGTAATTATATCCAAAATCA 41248
Query 38626 CTATCGTA 38633
| ||| ||
Sbjct 41247 CGATCATA 41240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468445560743200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |