Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq466 408 4e-109 >seq466 Length=100518 Score = 408 bits (452), Expect = 4e-109 Identities = 1226/1868 (66%), Gaps = 42/1868 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||||| ||||| || | |||||| | | ||||||||| || ||| Sbjct 43089 TCTACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTT 43030 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || ||| | |||| ||||| || || || | |||| | || | || | | Sbjct 43029 TTAAGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCA 42970 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | |||||||||||||| |||||||| ||||| || ||||||||| Sbjct 42969 GCAACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGCCATT 42910 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | | | ||| ||||||||||| || ||||| || | | || | || Sbjct 42909 TTAATAGTTGACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGGATTTCTTCG 42850 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 |||| | |||| || ||| ||||| || | | |||| ||| || || ||| Sbjct 42849 GGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCTCA 42790 Query 37087 TTATTCCACATATTT--CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | || ||||| || || | | || || | ||||| || ||||||||||| |||| Sbjct 42789 TCATCCCACAAATCAAGCTCCGT--TAAATCACGCAATAAATGAGGATTTACAACTTGAA 42732 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || || || ||||||| ||||||||| || || ||| || || || | ||||||| Sbjct 42731 ACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGACTCAT 42672 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | || | | |||||| | || ||||| || ||||| || || ||||| | |||| Sbjct 42671 TGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAGTTTC 42612 Query 37265 TCAATCCATG-TGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG- 37322 | | || || ||| || || | |||| || | || ||| ||||| | ||||||||| Sbjct 42611 TAACACCGTGCTGT-TTTATGGACCTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGT 42553 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | ||| | |||||||||||| |||| || || || || ||||| | |||| || Sbjct 42552 GATCTGT-TCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAATATAGGT 42494 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 ||||| || || | | || | | ||| ||||||| ||| | || |||| || || Sbjct 42493 TTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCATAGTAAAT 42434 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 ||||| || |||||| ||| || | |||||||||||| || | | | | | || Sbjct 42433 AGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAAACCTCAT 42374 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 | || || |||| || || || || ||||| ||||| || || | || ||| Sbjct 42373 CAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCCGTAAATT 42314 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 ||| | | ||| || |||||||| || ||||| ||||||||||| || ||||| Sbjct 42313 TGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTTTATTCAGGTTTTT 42254 Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAA-ATACGTTATTATTAAC 37679 | ||||| || | | ||| || | ||| | ||| || | | || Sbjct 42253 GGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCAC 42194 Query 37680 AAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAA 37739 ||| | | | | || ||| ||| |||||||||||| | ||| ||| | || || Sbjct 42193 AAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATTTCGTCT--GGCGCTGAA 42136 Query 37740 T--TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797 | | | ||| || || || | |||||| | | || ||||| | ||| ||||||| Sbjct 42135 TACTCAACAATTTCCGTGCATAAATTACTGCACTTTATAGTTCCAACATTTTGTTGATTG 42076 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 |||| | ||||| || |||||| | || || || || || || || | ||||| Sbjct 42075 CTTTTTCTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGAT 42016 Query 37858 TCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtttttt----tCTT 37913 || || || | ||| | | | || ||||| | || ||| | | || Sbjct 42015 TCAATTATGGCAAACCAAAGAGATTGAGCCTTAACAA----TTCGATTCTGTCGCCCCTC 41960 Query 37914 TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC--GCATAATCCT 37971 | |||| |||| | ||| ||||| | ||| || | ||||| ||||| ||| | || Sbjct 41959 TTTTTCATATTTGACATACAATTTTTCAAATTCTTCACCCCAAACATCTTGCAGA--CCG 41902 Query 37972 GGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAAT 38031 || |||| | ||||||||| | ||||| || || | ||| || || | |||||| Sbjct 41901 GGGCATTTGTGTGGACACATCAACGACCAATCCTCGTTGGCTTCAACCCGCTTCATAAAG 41842 Query 38032 AAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACA 38091 | |||||| | ||| || ||| ||||| ||| | | || ||| || || || | Sbjct 41841 AGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCCGATGTTCCTCTTTTCCAGTA 41782 Query 38092 TTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 || ||| ||||| | || ||| || || | || | ||||| || || | ||||| | Sbjct 41781 TT-TTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCCAAGGCTCCAGGTAAATAGC 41723 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | |||||||||||||||| |||| ||||||| | ||| | | || ||| ||| Sbjct 41722 GAATGCTCCTGGTCTTTTACCACCACCCTGATCGACATAGCGTGCCACATTGTTAAATAC 41663 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 ||| | ||| ||||| | ||||| || | || ||| | ||||| ||| | || ||||| Sbjct 41662 TCTAAGCATTGGTACCAAGCCATTTGAAGTACCATTTGTGCCGGAAATAGAGGTGCCCTT 41603 Query 38271 AGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGC 38329 ||||| ||| | | | | || || || || ||||| ||| || || | |||| Sbjct 41602 TGCTCGAATA-CAATGAACATTAAGACCAATGCCTCCTGCCGATTTGGAGATCATTGCGC 41544 Query 38330 ATTGTTTTAACGTATCAAATATACCTTCTATACTGTC--ATCCTTTATTGGTAGTATAAA 38387 | || | || || | |||||| ||||| ||| || || | |||| || | ||| Sbjct 41543 ACTGCTCTACTGTTTTAAATATTCCTTCAATAGAATCCGATGC--CATTGTTAAAAGAAA 41486 Query 38388 ACAACTAGACATTTGAGGCAATGG--AGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445 ||| || | ||| || | || || | || ||| | || || ||||||||| Sbjct 41485 ACATGATGATAATTGGGG--ACGGTTTGTGGCAGCAGCAAAAAGCGTTGGTGATGCATGT 41428 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 | || | |||||| | ||||||||||||| || || ||| |||||| | || Sbjct 41427 GTAAAATAACGTTCCGATAGTAAATTATATGTTTCAATCGCAGAATCAATATCATCACCA 41368 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTC 38565 || ||||| | | || | ||||||||| || ||||||| ||| |||||| ||| Sbjct 41367 TGTATACCAATTGCGACACGCATTAGCATGTGCTGTGGTCGTTCCGCTATTTTGCCATTA 41308 Query 38566 TGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCT 38625 |||||| | ||| ||| || | ||| || | |||||| ||| ||||| | |||| Sbjct 41307 ATTTTAAGCAAATATGATCGCTCAAGTGTCTTAAATCCAAAGTAATTATATCCAAAATCA 41248 Query 38626 CTATCGTA 38633 | ||| || Sbjct 41247 CGATCATA 41240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468445560743200