Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3023 91.5 1e-13 >seq3023 Length=5802038 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 20920 GCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGT 20979 || |||| || || | ||||| |||||||| || || || | |||||| | || | Sbjct 3647835 GCTGCAGCGGTTCTATATGGTTAAGATAAACGTGAGCATCGCCTATGGTGTGGATGAATT 3647776 Query 20980 CTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGA 21039 | || || |||| ||||| || || || || | ||| || || || || ||| ||| | Sbjct 3647775 CACCGGGCTTCAGACCCGTCACATGGGCTATTAAATAAGTGAGCAGAGCATAGGAGGCAA 3647716 Query 21040 TGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCT 21099 |||| || || || ||||| |||||||| ||| | || || ||||||||||||| | Sbjct 3647715 TGTTGAAGGGAACACCGAGACCCATGTCAGCGCTGCGTTGATATAGCTGGCAGGACAATT 3647656 Query 21100 CCCCC 21104 | ||| Sbjct 3647655 CGCCC 3647651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427705461074400