Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3383 93.3 3e-14 >seq3383 Length=19223366 Score = 93.3 bits (102), Expect = 3e-14 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCATCG-TTCACGGCCCAGAAGGGCACGTGCGG 33623 ||||||||| |||| |||||||||||||| ||| |||||| |||||||| || || || Sbjct 17993941 CGCATACCACAGATTGGCGACAAGTTTGCCTCGCGTCACGG-ACAGAAGGGTACATGTGG 17993999 Query 33624 CATGATGTA-CGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAG 33682 ||| ||| || | || ||||||||| ||||| || || ||| || ||| | Sbjct 17994000 CATACAGTATCGGCAAG-AGGACATGCCATTCACCTGTGAGGGTTTGGCGCCAGACATTA 17994058 Query 33683 TCATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 ||||||| ||||| || | |||||||| ||||| Sbjct 17994059 TCATCAATCCGCACGCTATTCCCTCGCGTATGAC 17994092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356174858192590