Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq3603 116 4e-21
seq3378 107 2e-18
seq359 89.7 5e-13
seq466 84.2 2e-11
>seq3603
Length=2672878
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| || ||||| | || ||||| ||||||||||| || ||
Sbjct 316357 CCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAA 316298
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || ||||| || || ||| |||||||||| |||||||| || ||
Sbjct 316297 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGA 316238
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||||||||| |||||| || | | || | ||||| | |||||| |||
Sbjct 316237 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 316178
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||||||||| | ||||| || || ||||||||
Sbjct 316177 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131
>seq3378
Length=5191987
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | ||||| ||| ||||| | || ||||| || |||||||| || ||| |
Sbjct 4218048 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4217989
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | || | || || ||||| || || || |||||| ||| |||||||| || ||
Sbjct 4217988 AAAGTACGTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 4217930
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| ||| || || | | || | || |||| ||||||||
Sbjct 4217929 AATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217870
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | |||||||| ||||| || || ||||| || |||||
Sbjct 4217869 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217822
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | ||| | |||| || ||||| || || ||||| || |||
Sbjct 4217137 GCCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 4217078
Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
|| |||| || | || || | ||| || ||||| |||||| ||| |||||||| || |
Sbjct 4217077 CAAGGTGCGTCCA-TCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGG 4217019
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| ||||| || ||||| ||| || || | | || | || |||| |||||||
Sbjct 4217018 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCA 4216959
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| | ||| | |||||||| ||||| || || ||||| || |||||
Sbjct 4216958 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216910
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | ||| | |||| || ||||| || || ||||| || |||
Sbjct 4217821 GCCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 4217762
Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
|| |||| || | || || | ||| || ||||| |||||| ||| |||||||| || |
Sbjct 4217761 CAAGGTGCGTCCA-TCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGG 4217703
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| ||||| || ||||| ||| || || | | || | || |||| |||||||
Sbjct 4217702 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCA 4217643
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| | ||| | |||||||| ||||| || || ||||| || |||||
Sbjct 4217642 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217594
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | ||| | |||| || ||||| || || ||||| || |||
Sbjct 4217365 GCCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 4217306
Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
|| |||| || | || || | ||| || ||||| |||||| ||| |||||||| || |
Sbjct 4217305 CAAGGTGCGTCCA-TCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGG 4217247
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| || || || ||||| ||| || || | | || | || |||| |||||||
Sbjct 4217246 GAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCA 4217187
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| | ||| | |||||||| ||||| || || ||||| || |||||
Sbjct 4217186 CCTCCAAGGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217138
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || ||||| | || ||||| || || ||||| || |||
Sbjct 4216909 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 4216850
Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
|| || | || | || || ||||| || || || |||||| ||| |||||||| || |
Sbjct 4216849 CAAAGTACGTCCA-TCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 4216791
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| || || || ||||| ||| || || | | || | || |||| |||||||
Sbjct 4216790 GAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCA 4216731
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| | ||| | |||||||| ||||| || || ||||| || ||||||
Sbjct 4216730 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 4216681
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || ||||| | || ||||| || || ||||| || |||
Sbjct 4217593 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 4217534
Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
|| || | || | || || ||||| || || || |||||| ||| |||||||| || |
Sbjct 4217533 CAAAGTACGTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 4217475
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| || || || ||||| ||| || || | | || | || |||| |||||||
Sbjct 4217474 GAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCA 4217415
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| | ||| | |||||||| ||||| || || ||||| || |||||
Sbjct 4217414 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217366
>seq359
Length=456481
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| || || ||||| || ||
Sbjct 66118 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 66059
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| || || || || || |||||||||| ||||| || |||||
Sbjct 66058 AGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 65999
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | || |||| |||||||||
Sbjct 65998 ATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACC 65939
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||| || ||||| ||||||||||| || |||||
Sbjct 65938 TCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 65892
Score = 84.2 bits (92), Expect = 2e-11
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || || || || || ||||| ||||| |
Sbjct 66574 CCACCACGCAGACGAAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGAC 66515
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| || | ||||| || || || || ||| |||||||||| ||||| || |||||
Sbjct 66514 AACGTGCGTCCA-TCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGG 66456
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCC 139714
|| || || ||||| ||| | || | || | |||| || || | || | ||||||
Sbjct 66455 GATTCCCTCCTTGTCC-TGAATCTTGGCCTTCAC-GTTCTCAATGGTATCACTAGGCTCC 66398
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| | || | ||||| || |||| || || ||||| || ||||||
Sbjct 66397 ACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATA 66347
>seq466
Length=100518
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684
|||| | ||| || || || || || || || || ||||||| || || |||| | |
Sbjct 42188 TGTTTAGGGCTATTGATGCTAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAA 42129
Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744
| ||||||| || ||||| ||||| ||||| || ||| |||||||||||| |
Sbjct 42128 CAATTTCCGTGCATAAATTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTC 42069
Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804
|||||| | ||| || | |||||||| || || || || || ||||| ||| || |
Sbjct 42068 TGTTACACGAGTCTTTAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTA 42009
Query 153805 T 153805
|
Sbjct 42008 T 42008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495980103176000
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