Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq466 589 3e-163
seq3134 295 1e-74
>seq466
Length=100518
Score = 589 bits (652), Expect = 3e-163
Identities = 1248/1848 (68%), Gaps = 26/1848 (1%)
Strand=Plus/Minus
Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798
|| ||||| || || ||||| ||||| || ||||| || || |||| || ||
Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003
Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858
|| || |||| ||| ||| | || || || | ||| ||||| | ||||||||||
Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943
Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918
||||| || || || || || || || |||||||| || | | |||| | || |||
Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883
Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGA 78974
|| | ||||| || || || | | | ||||| || | | || | |||| || || ||
Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGA 42824
Query 78975 TCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 79034
||| | ||| ||||| ||| || ||||| |||| ||| || | ||| |||||
Sbjct 42823 TCCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAA 42764
Query 79035 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 79094
| | | | | ||| ||||| || |||||||| || || |||||||||| | || ||
Sbjct 42763 ATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATA 42704
Query 79095 AATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGC 79154
||| || || || || || | ||| ||||| || |||| ||||| ||||| |||||
Sbjct 42703 AATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGC 42644
Query 79155 CGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTAT---- 79210
|| ||||| || || | | ||| ||||||| ||||| ||| ||||||
Sbjct 42643 TGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGAC 42589
Query 79211 CTTTTAGAGAT--TCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTG 79268
|||||| |||| ||||| ||||||||||| | || ||||| | |||||| ||
Sbjct 42588 CTTTTA-AGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTG 42530
Query 79269 TAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGC 79328
|| || || || || | ||| | || |||||||| || || ||||| | ||
Sbjct 42529 TAAAACTCCCTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGA 42470
Query 79329 TAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAG 79388
||||||||||| || || || ||||| || ||||| ||||| || || | | ||| |
Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410
Query 79389 ATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 79448
| ||||||| ||| ||| | ||| | | | ||||| || || ||||| || ||
Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350
Query 79449 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGG 79508
||| ||||||||||| ||||| | || | ||| || ||| || ||||| | ||
Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290
Query 79509 ATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTT 79568
|||||| || ||||| || |||||||| || || || | | ||| ||||| ||
Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230
Query 79569 TAGTTTGAGAAAATC---AAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGC 79625
||||| || || | || | | | | ||||||||||| | || | |||||
Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGC 42170
Query 79626 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTT 79685
| |||||| || |||| || | | | | ||| | | ||||| ||||| | ||
Sbjct 42169 TAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATT 42110
Query 79686 ACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 79745
||| ||||| || ||||| | |||||||||||| || ||| ||||||||| || ||| |
Sbjct 42109 ACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAA 42050
Query 79746 AAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 79805
||| ||| | || |||||||| || | |||||||| || || || ||| | | |
Sbjct 42049 AAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTG 41990
Query 79806 AGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 79865
|||||| | || || | || | ||| |||| |||| ||| ||| ||| ||
Sbjct 41989 AGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCAAA 41930
Query 79866 CTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTC 79925
|| || ||||||||||| | | || || |||| || ||||||||||||||||| ||
Sbjct 41929 TTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATC 41870
Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 79985
| | | | || || ||||||||||||||||||||||| | || |||||||||
Sbjct 41869 CTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATC 41810
Query 79986 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 80045
| | | ||| ||||| ||||| ||||| |||||||| || | || | | | ||
Sbjct 41809 CCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTC 41750
Query 80046 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATC 80105
|||||||| || |||| ||| || || | |||| |||| ||| || ||||||||
Sbjct 41749 TGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATC 41690
Query 80106 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 80165
| || | || || ||| | ||||| | |||||| | | ||||| || |||||
Sbjct 41689 GACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTACC 41630
Query 80166 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 80225
||| || ||||| ||| || | || | || |||||| | || ||||| || ||
Sbjct 41629 ATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATGCC 41570
Query 80226 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCT 80285
|||||| ||| ||||| | |||||| | | || || | | | || || || ||
Sbjct 41569 TCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAATAGA 41510
Query 80286 ATC--AT-CAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 80342
||| || | || |||||| |||||||| || | |||| |||| | || | ||
Sbjct 41509 ATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGCAGC 41453
Query 80343 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 80402
| ||| | || || || || || ||||| | ||| || |||| ||| || || ||
Sbjct 41452 AGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTTTC 41393
Query 80403 AATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTG 80462
||| || || || ||||| ||| || || | ||||||||||||| |||||||||
Sbjct 41392 AATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGTGCTG 41333
Query 80463 AGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAA 80522
|||| ||| | || ||| ||| ||||| | ||| || ||| || | || |||||
Sbjct 41332 TGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTTAAA 41273
Query 80523 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570
||||| || || ||| ||| || || || ||||| || | |||||
Sbjct 41272 TCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225
>seq3134
Length=2474545
Score = 295 bits (326), Expect = 1e-74
Identities = 574/842 (68%), Gaps = 17/842 (2%)
Strand=Plus/Minus
Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719
|| |||||| || ||||| ||||| ||| || || ||||| ||||| || |||||
Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142
Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779
|| || |||||||||| ||||||||| | || || | ||| | || | |
Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082
Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839
||| | || | ||| || ||||| || |||||| ||| | | | ||||||||
Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022
Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899
|| || | || || || || || |||||||||| || |||||||||| || |||||
Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962
Query 49900 GTTATAATAGATCTAA------CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953
| || ||||| | || | ||| || || | |||| ||||| | |||
Sbjct 573961 GAGAT----GATCTCAATGATGCGCTCTCTGCAG--GGACGCTGCACCAAATGCTGGAAC 573908
Query 49954 ATCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012
|||| ||| || || ||||| ||||| |||||||| | || |||||||| || ||
Sbjct 573907 ATCAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAA 573849
Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072
||||| |||||||| ||||||||||| || |||||||| || || ||||| ||
Sbjct 573848 AGTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCT 573789
Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGT 50131
||||||||| || || || || ||||| || | | | ||| ||| | | || || |
Sbjct 573788 AAAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTT 573729
Query 50132 CATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189
| |||||| | ||||| ||||||||| || || ||||| ||||| ||
Sbjct 573728 AGAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAAT 573669
Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249
|||||||| ||||| | | || ||| | ||| || || |||| | ||
Sbjct 573668 TGCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCT 573609
Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309
||||||||||| || | || || ||||| |||||||| || ||||| || | ||||||
Sbjct 573608 GTACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTC 573549
Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369
|||||||| ||||| | ||| || || | | ||| || || || || || ||
Sbjct 573548 TGTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGA 573489
Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429
||| |||||||| |||| |||||| || ||||| |||||| ||||||
Sbjct 573488 GGCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGC 573429
Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489
||| ||| | | ||| ||||| | ||| ||||| ||||| ||||| ||||||||||| ||
Sbjct 573428 CCAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369
Query 50490 CT 50491
||
Sbjct 573368 CT 573367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718147322789200
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