Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq466 589 3e-163 seq3134 295 1e-74 >seq466 Length=100518 Score = 589 bits (652), Expect = 3e-163 Identities = 1248/1848 (68%), Gaps = 26/1848 (1%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||| || || ||||| ||||| || ||||| || || |||| || || Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || || |||| ||| ||| | || || || | ||| ||||| | |||||||||| Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| || || || || || || || |||||||| || | | |||| | || ||| Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGA 78974 || | ||||| || || || | | | ||||| || | | || | |||| || || || Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGA 42824 Query 78975 TCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 79034 ||| | ||| ||||| ||| || ||||| |||| ||| || | ||| ||||| Sbjct 42823 TCCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAA 42764 Query 79035 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 79094 | | | | | ||| ||||| || |||||||| || || |||||||||| | || || Sbjct 42763 ATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATA 42704 Query 79095 AATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGC 79154 ||| || || || || || | ||| ||||| || |||| ||||| ||||| ||||| Sbjct 42703 AATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGC 42644 Query 79155 CGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTAT---- 79210 || ||||| || || | | ||| ||||||| ||||| ||| |||||| Sbjct 42643 TGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGAC 42589 Query 79211 CTTTTAGAGAT--TCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTG 79268 |||||| |||| ||||| ||||||||||| | || ||||| | |||||| || Sbjct 42588 CTTTTA-AGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTG 42530 Query 79269 TAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGC 79328 || || || || || | ||| | || |||||||| || || ||||| | || Sbjct 42529 TAAAACTCCCTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGA 42470 Query 79329 TAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAG 79388 ||||||||||| || || || ||||| || ||||| ||||| || || | | ||| | Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410 Query 79389 ATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 79448 | ||||||| ||| ||| | ||| | | | ||||| || || ||||| || || Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350 Query 79449 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGG 79508 ||| ||||||||||| ||||| | || | ||| || ||| || ||||| | || Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290 Query 79509 ATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTT 79568 |||||| || ||||| || |||||||| || || || | | ||| ||||| || Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230 Query 79569 TAGTTTGAGAAAATC---AAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGC 79625 ||||| || || | || | | | | ||||||||||| | || | ||||| Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGC 42170 Query 79626 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTT 79685 | |||||| || |||| || | | | | ||| | | ||||| ||||| | || Sbjct 42169 TAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATT 42110 Query 79686 ACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 79745 ||| ||||| || ||||| | |||||||||||| || ||| ||||||||| || ||| | Sbjct 42109 ACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAA 42050 Query 79746 AAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 79805 ||| ||| | || |||||||| || | |||||||| || || || ||| | | | Sbjct 42049 AAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTG 41990 Query 79806 AGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 79865 |||||| | || || | || | ||| |||| |||| ||| ||| ||| || Sbjct 41989 AGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCAAA 41930 Query 79866 CTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTC 79925 || || ||||||||||| | | || || |||| || ||||||||||||||||| || Sbjct 41929 TTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATC 41870 Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 79985 | | | | || || ||||||||||||||||||||||| | || ||||||||| Sbjct 41869 CTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATC 41810 Query 79986 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 80045 | | | ||| ||||| ||||| ||||| |||||||| || | || | | | || Sbjct 41809 CCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTC 41750 Query 80046 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATC 80105 |||||||| || |||| ||| || || | |||| |||| ||| || |||||||| Sbjct 41749 TGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATC 41690 Query 80106 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 80165 | || | || || ||| | ||||| | |||||| | | ||||| || ||||| Sbjct 41689 GACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTACC 41630 Query 80166 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 80225 ||| || ||||| ||| || | || | || |||||| | || ||||| || || Sbjct 41629 ATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATGCC 41570 Query 80226 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCT 80285 |||||| ||| ||||| | |||||| | | || || | | | || || || || Sbjct 41569 TCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAATAGA 41510 Query 80286 ATC--AT-CAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 80342 ||| || | || |||||| |||||||| || | |||| |||| | || | || Sbjct 41509 ATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGCAGC 41453 Query 80343 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 80402 | ||| | || || || || || ||||| | ||| || |||| ||| || || || Sbjct 41452 AGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTTTC 41393 Query 80403 AATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTG 80462 ||| || || || ||||| ||| || || | ||||||||||||| ||||||||| Sbjct 41392 AATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGTGCTG 41333 Query 80463 AGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAA 80522 |||| ||| | || ||| ||| ||||| | ||| || ||| || | || ||||| Sbjct 41332 TGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTTAAA 41273 Query 80523 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 ||||| || || ||| ||| || || || ||||| || | ||||| Sbjct 41272 TCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225 >seq3134 Length=2474545 Score = 295 bits (326), Expect = 1e-74 Identities = 574/842 (68%), Gaps = 17/842 (2%) Strand=Plus/Minus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 || |||||| || ||||| ||||| ||| || || ||||| ||||| || ||||| Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 || || |||||||||| ||||||||| | || || | ||| | || | | Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 ||| | || | ||| || ||||| || |||||| ||| | | | |||||||| Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || || | || || || || || |||||||||| || |||||||||| || ||||| Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962 Query 49900 GTTATAATAGATCTAA------CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 | || ||||| | || | ||| || || | |||| ||||| | ||| Sbjct 573961 GAGAT----GATCTCAATGATGCGCTCTCTGCAG--GGACGCTGCACCAAATGCTGGAAC 573908 Query 49954 ATCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012 |||| ||| || || ||||| ||||| |||||||| | || |||||||| || || Sbjct 573907 ATCAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAA 573849 Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072 ||||| |||||||| ||||||||||| || |||||||| || || ||||| || Sbjct 573848 AGTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCT 573789 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGT 50131 ||||||||| || || || || ||||| || | | | ||| ||| | | || || | Sbjct 573788 AAAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTT 573729 Query 50132 CATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 | |||||| | ||||| ||||||||| || || ||||| ||||| || Sbjct 573728 AGAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAAT 573669 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 |||||||| ||||| | | || ||| | ||| || || |||| | || Sbjct 573668 TGCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCT 573609 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||||||| || | || || ||||| |||||||| || ||||| || | |||||| Sbjct 573608 GTACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTC 573549 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 |||||||| ||||| | ||| || || | | ||| || || || || || || Sbjct 573548 TGTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGA 573489 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 ||| |||||||| |||| |||||| || ||||| |||||| |||||| Sbjct 573488 GGCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGC 573429 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| ||| | | ||| ||||| | ||| ||||| ||||| ||||| ||||||||||| || Sbjct 573428 CCAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369 Query 50490 CT 50491 || Sbjct 573368 CT 573367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718147322789200