Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 192 6e-44
>seq3134
Length=2474545
Score = 192 bits (212), Expect = 6e-44
Identities = 569/872 (65%), Gaps = 4/872 (0%)
Strand=Plus/Minus
Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582
||| ||||| |||| | || ||| |||||||| || || | |||||||||
Sbjct 574250 CTAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATTTGATGTGACGCCCATTCG 574191
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
|||||||| | ||| |||| |||||||| || ||||| || |||| || || ||||
Sbjct 574190 CTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTC 574131
Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702
||| || ||| ||||| ||| | ||| ||| | || ||||| | || |
Sbjct 574130 CATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGTTCAACCAGCAG 574071
Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762
| ||| || | |||||||||||||| ||||| | | |||||||| || || | ||
Sbjct 574070 ACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAAATT 574011
Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822
|| || | | | || | ||| || | ||| || | ||||| || || ||
Sbjct 574010 GACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGATCTC 573951
Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA-ACACGCAAAAT 13881
| || ||| | | ||| | | | ||| | || || | ||| ||||| |
Sbjct 573950 AATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACA-GCAAAGT 573892
Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941
| ||||| || ||||| || | || |||||||| || || || | || ||||| |
Sbjct 573891 CGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGCATAA 573832
Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001
|| || || || | |||||| || | |||||| ||| |||||| || |||||||
Sbjct 573831 GGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCCTCAA 573772
Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061
| |||||||| || || | || || ||||| ||| || ||||||||
Sbjct 573771 CAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGATATCCAAGAAA 573712
Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121
||||| || | || |||| |||||||||||| |||||||||| ||| |
Sbjct 573711 GCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAGATAAT 573652
Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181
| || | | | || ||||| ||||| || | ||| |||||||| ||||| |
Sbjct 573651 CACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGAGTGGA 573592
Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241
|| ||||| ||||||||||| ||||| ||||| | ||| || | || ||||||
Sbjct 573591 CATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAACTTCCT 573532
Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301
| ||| | ||| ||| ||| || ||||| || ||||| || |||||||| ||||
Sbjct 573531 GGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAGGCCA 573472
Query 14302 ATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAATCGGATAAATCC 14360
| | | ||| || | |||| || |||| || | ||| || | | ||||
Sbjct 573471 GAACATGTGAAATGAAATGACGCTCGTTGTCTGTT-AGGCGTGCCCAGTCAGTCAGATCC 573413
Query 14361 TTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
||||| ||||| ||||| || || ||||| ||
Sbjct 573412 TTAGACAGATCCACTTCCTCCACAGTCCAGAA 573381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479646866002000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |