Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3134 192 6e-44 >seq3134 Length=2474545 Score = 192 bits (212), Expect = 6e-44 Identities = 569/872 (65%), Gaps = 4/872 (0%) Strand=Plus/Minus Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582 ||| ||||| |||| | || ||| |||||||| || || | ||||||||| Sbjct 574250 CTAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATTTGATGTGACGCCCATTCG 574191 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||| |||| |||||||| || ||||| || |||| || || |||| Sbjct 574190 CTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTC 574131 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 ||| || ||| ||||| ||| | ||| ||| | || ||||| | || | Sbjct 574130 CATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGTTCAACCAGCAG 574071 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | ||| || | |||||||||||||| ||||| | | |||||||| || || | || Sbjct 574070 ACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAAATT 574011 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || || | | | || | ||| || | ||| || | ||||| || || || Sbjct 574010 GACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGATCTC 573951 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA-ACACGCAAAAT 13881 | || ||| | | ||| | | | ||| | || || | ||| ||||| | Sbjct 573950 AATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACA-GCAAAGT 573892 Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941 | ||||| || ||||| || | || |||||||| || || || | || ||||| | Sbjct 573891 CGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGCATAA 573832 Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001 || || || || | |||||| || | |||||| ||| |||||| || ||||||| Sbjct 573831 GGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCCTCAA 573772 Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061 | |||||||| || || | || || ||||| ||| || |||||||| Sbjct 573771 CAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGATATCCAAGAAA 573712 Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121 ||||| || | || |||| |||||||||||| |||||||||| ||| | Sbjct 573711 GCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAGATAAT 573652 Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 | || | | | || ||||| ||||| || | ||| |||||||| ||||| | Sbjct 573651 CACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGAGTGGA 573592 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241 || ||||| ||||||||||| ||||| ||||| | ||| || | || |||||| Sbjct 573591 CATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAACTTCCT 573532 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 | ||| | ||| ||| ||| || ||||| || ||||| || |||||||| |||| Sbjct 573531 GGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAGGCCA 573472 Query 14302 ATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAATCGGATAAATCC 14360 | | | ||| || | |||| || |||| || | ||| || | | |||| Sbjct 573471 GAACATGTGAAATGAAATGACGCTCGTTGTCTGTT-AGGCGTGCCCAGTCAGTCAGATCC 573413 Query 14361 TTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 ||||| ||||| ||||| || || ||||| || Sbjct 573412 TTAGACAGATCCACTTCCTCCACAGTCCAGAA 573381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479646866002000