Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 167 2e-36
>seq3134
Length=2474545
Score = 167 bits (184), Expect = 2e-36
Identities = 566/875 (65%), Gaps = 10/875 (1%)
Strand=Plus/Minus
Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370
||| ||||| |||| | || ||| |||||||| || || | |||||||||
Sbjct 574250 CTAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATTTGATGTGACGCCCATTCG 574191
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
|||||||| | ||| |||| ||||| || || ||||| || |||| || || ||||
Sbjct 574190 CTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTC 574131
Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490
||| || || ||||| ||| | ||| ||| | || ||||| | | |
Sbjct 574130 CATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGTTCAACCAGCAG 574071
Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550
| ||| || | |||||||||||||| ||||| | | |||||||| || || | ||
Sbjct 574070 ACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAAATT 574011
Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610
|| || | | | ||| | ||| || | ||| || | ||||| ||| || ||
Sbjct 574010 GACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGAT--- 573954
Query 13611 CTTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA-ACACGCAA 13666
|| ||| ||| || | | ||| | | | ||| | || || | ||| ||||
Sbjct 573953 CTCAATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACA-GCAA 573895
Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726
| || ||||| || ||||| || | || |||||||| || || || | || ||||
Sbjct 573894 AGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGCA 573835
Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786
| | || || || || | |||||| || | ||| || ||| |||||| || ||||
Sbjct 573834 TAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCCT 573775
Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846
|||| |||||||| || || | || || ||||| ||| || ||||||||
Sbjct 573774 CAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGATATCCAAG 573715
Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906
||||| || | || |||| ||||||||| |||||||| |||| ||
Sbjct 573714 AAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAGAT 573655
Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 13966
|| || | | | || ||||| ||||| || | ||| |||||||| ||||
Sbjct 573654 AATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGAGT 573595
Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14026
| | || || || ||||||||||| ||||| || || | ||| |||| || || |
Sbjct 573594 GGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAACTT 573535
Query 14027 CCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086
|| | ||| | || ||| || || |||||||| ||||| || |||||||| |
Sbjct 573534 CCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAGG 573475
Query 14087 CCAATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAATCGGCTAAA 14145
||| | | | ||| || | |||| || |||| || | ||| || | | |
Sbjct 573474 CCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTT-AGGCGTGCCCAGTCAGTCAGA 573416
Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCaaaa 14180
|||||||| ||||| ||||| || || ||||| ||
Sbjct 573415 TCCTTAGACAGATCCACTTCCTCCACAGTCCAGAA 573381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478507858669200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |