Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3134 167 2e-36 >seq3134 Length=2474545 Score = 167 bits (184), Expect = 2e-36 Identities = 566/875 (65%), Gaps = 10/875 (1%) Strand=Plus/Minus Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370 ||| ||||| |||| | || ||| |||||||| || || | ||||||||| Sbjct 574250 CTAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATTTGATGTGACGCCCATTCG 574191 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||| | ||| |||| ||||| || || ||||| || |||| || || |||| Sbjct 574190 CTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTC 574131 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||| || || ||||| ||| | ||| ||| | || ||||| | | | Sbjct 574130 CATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGTTCAACCAGCAG 574071 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 | ||| || | |||||||||||||| ||||| | | |||||||| || || | || Sbjct 574070 ACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAAATT 574011 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 || || | | | ||| | ||| || | ||| || | ||||| ||| || || Sbjct 574010 GACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGAT--- 573954 Query 13611 CTTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA-ACACGCAA 13666 || ||| ||| || | | ||| | | | ||| | || || | ||| |||| Sbjct 573953 CTCAATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACA-GCAA 573895 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 | || ||||| || ||||| || | || |||||||| || || || | || |||| Sbjct 573894 AGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGCA 573835 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | | || || || || | |||||| || | ||| || ||| |||||| || |||| Sbjct 573834 TAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCCT 573775 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846 |||| |||||||| || || | || || ||||| ||| || |||||||| Sbjct 573774 CAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGATATCCAAG 573715 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 ||||| || | || |||| ||||||||| |||||||| |||| || Sbjct 573714 AAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAGAT 573655 Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 13966 || || | | | || ||||| ||||| || | ||| |||||||| |||| Sbjct 573654 AATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGAGT 573595 Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14026 | | || || || ||||||||||| ||||| || || | ||| |||| || || | Sbjct 573594 GGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAACTT 573535 Query 14027 CCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 || | ||| | || ||| || || |||||||| ||||| || |||||||| | Sbjct 573534 CCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAGG 573475 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAATCGGCTAAA 14145 ||| | | | ||| || | |||| || |||| || | ||| || | | | Sbjct 573474 CCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTT-AGGCGTGCCCAGTCAGTCAGA 573416 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCaaaa 14180 |||||||| ||||| ||||| || || ||||| || Sbjct 573415 TCCTTAGACAGATCCACTTCCTCCACAGTCCAGAA 573381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478507858669200