Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq466 509 2e-139 seq3134 237 2e-57 >seq466 Length=100518 Score = 509 bits (564), Expect = 2e-139 Identities = 1220/1836 (66%), Gaps = 30/1836 (2%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || || ||||| |||||||||||||| || || |||| ||||| || || Sbjct 43057 TTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAGTGGAT 42998 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 |||| ||| |||| | || || || | |||||||| | || ||||||||||| Sbjct 42997 TGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTTTGATC 42938 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 || || || || || || || |||||||| || | | |||| | || ||||| | Sbjct 42937 AATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCCCATAC 42878 Query 71007 AGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGATCCAC 71062 ||||| || || || | | | ||||| || | | || | |||| || || ||||| | Sbjct 42877 GGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGATCCTC 42819 Query 71063 CATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC 71122 ||| ||||| |||||| ||||| |||| ||| || | ||| |||||| | | Sbjct 42818 GGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAAATCAC 42759 Query 71123 TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATAT 71182 | | ||||||||| || |||||||| || || |||||||||| | || ||||| | Sbjct 42758 GCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATAAATGT 42699 Query 71183 TACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCG 71242 | || || || || | |||||||| || |||| ||||| ||||| ||||| || | Sbjct 42698 TTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGG 42639 Query 71243 GCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTAT----CTTTT 71298 |||| || || | | | | ||||||| ||| || | | |||||| ||||| Sbjct 42638 GCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGACCTTTT 42584 Query 71299 AGAGAT--TCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNA 71356 | |||| ||||| | ||||||||| | |||| | Sbjct 42583 A-AGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGTAAAA 42525 Query 71357 TGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTT 71416 || || || | ||| ||| || || || || || || || | || | || Sbjct 42524 CTCCCTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACAATT 42465 Query 71417 CACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 71476 ||||||| || || || |||||||| ||||| ||||| || || | | ||| | | Sbjct 42464 CACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAG 42405 Query 71477 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 71536 |||||| ||| ||| | ||| | | | ||||| || || ||||| || ||||| | Sbjct 42404 ATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCCTTGTA 42345 Query 71537 CGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 71596 | |||||||| ||||| | ||| | ||| || ||| || ||||| | ||||||| Sbjct 42344 CACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGGATAAT 42285 Query 71597 AATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTT 71656 | || ||||| || |||||||| || ||| || | | ||| ||||| || |||| Sbjct 42284 AGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCAGTT 42225 Query 71657 TGAGAAAATC---AAATCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 | || || | || | | | | ||||||| ||| | ||| | ||||| | || Sbjct 42224 TTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGCTAAAT 42165 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 |||| || |||| || | | | | ||| | | |||||| ||||| | |||||| | Sbjct 42164 TACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGC 42105 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 |||| || ||||| | |||||||||||| || ||| ||||||||| || ||| |||| | Sbjct 42104 ACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAAAAGCA 42045 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 | | || |||||||| || | |||||||| || || || ||| | | |||||| Sbjct 42044 TGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTGAGCCT 41985 Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953 | | || || | || | ||| |||| |||| ||| ||| ||| || || | Sbjct 41984 TAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCAAATTCTT 41925 Query 71954 CTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCAT 72013 | |||||| ||| | | || || |||| | ||||||||||| ||||| || | | Sbjct 41924 CACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATCCTCGT 41865 Query 72014 CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 72073 | | || || ||||||||||||||||||||||| | || ||||||||| | | Sbjct 41864 TGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAG 41805 Query 72074 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 72133 | ||| ||||| ||||| ||||| |||||||| || | || | | | || |||| Sbjct 41804 CCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCTGAAT 41745 Query 72134 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGT 72193 |||| || |||| ||| || || | |||| || | ||| || |||||||| | | Sbjct 41744 GCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCGACAT 41685 Query 72194 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGG 72253 | | || || ||| | ||||| | |||||| | | ||||| || | |||||| | Sbjct 41684 AGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTACCATTTG 41625 Query 72254 TCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCC 72311 | ||||| ||| || | || | || ||||| | || ||| ||||| || || || Sbjct 41624 TGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATT--AAGACCAATGCCTCC 41567 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 |||| ||| ||||| | |||||| | | || || | | | || || || ||| ||| Sbjct 41566 TGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAATAGAATC 41507 Query 72372 --AT-CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 72428 || |||| |||||| |||||||| || | |||| |||| | || | ||| Sbjct 41506 CGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGCAGCAGC 41450 Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 ||| | || || || || || ||||| | ||| || |||| ||| || || ||||| Sbjct 41449 AAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTTTCAAT 41390 Query 72489 AGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 || || || ||||| |||||| || | ||||||||||||| ||| ||||| || Sbjct 41389 CGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGTGCTGTGG 41330 Query 72549 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 72608 || ||| | || ||| ||| ||||| | ||| || ||| || | || ||||| || Sbjct 41329 TCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTTAAATCC 41270 Query 72609 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| || || ||| ||| || || || ||||| || Sbjct 41269 AAAGTAATTATATCCAAAATCACGATCATAAATTAT 41234 >seq3134 Length=2474545 Score = 237 bits (262), Expect = 2e-57 Identities = 562/841 (67%), Gaps = 15/841 (2%) Strand=Plus/Minus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 || |||||| || ||||| ||||| ||| || || ||||| || || || ||||| Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || |||||||||| ||||||||| | || || | ||| | || | | Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 ||| | || | ||| || | || || |||||| ||| | | | |||||||| Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022 Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004 || || | || || || || || |||||||||| || |||||||| | || || || Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962 Query 42005 GTTATAATAGATCTTACTGTTTCT-TCACTCGGTGGA---TACAATAAATGTTTAAACAT 42060 | || ||||| | || | | || || ||| | || ||||| | ||||| Sbjct 573961 GAGAT----GATCTCAATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACAT 573906 Query 42061 CAA-ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 || ||| || || ||||| ||||| ||||| || | || | |||||| || || | Sbjct 573905 CAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAG 573847 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 |||| |||||||| ||||||||||| || |||||||| ||||| ||||| || || Sbjct 573846 TGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAA 573787 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGT 42236 ||||||| || || || || ||||| || || | | ||| ||| | | | || || Sbjct 573786 AGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC-CTTA 573728 Query 42237 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | |||||| | ||||| ||||||||| || || ||||| ||||| || Sbjct 573727 GAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATT 573668 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 |||||||| ||||| | | || ||| | |||||| || |||| | || Sbjct 573667 GCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTG 573608 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| || || | || || ||||| |||||||| || ||||| || | ||||| Sbjct 573607 TACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCT 573548 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 |||| ||| ||||| | ||| || || | | ||| ||||| || || || || | Sbjct 573547 GTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAG 573488 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 || |||||||| |||| |||||| || |||| |||| ||||| | Sbjct 573487 GCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCC 573428 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || ||| | | ||| ||||| | ||| ||||| || || ||||| |||||||| || ||| Sbjct 573427 CAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGCC 573368 Query 42596 T 42596 | Sbjct 573367 T 573367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671025693582800