Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq466 113 5e-20
seq3603 86.0 6e-12
seq359 82.4 8e-11
>seq466
Length=100518
Score = 113 bits (124), Expect = 5e-20
Identities = 303/463 (65%), Gaps = 3/463 (1%)
Strand=Plus/Minus
Query 156769 CAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAA 156828
|| ||| |||| || || | || ||| || | ||||||| ||||||| ||||||
Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410
Query 156829 TAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACC 156888
||| || | ||||| | ||||| | | || || || |||||||| || || ||
Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350
Query 156889 TTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGG 156948
||| | ||||| || || || || || || | ||| ||||||||||| | | ||
Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290
Query 156949 GTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTG 157008
|| | || |||||| |||||||||| | | ||| ||| ||| |
Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230
Query 157009 CAATAGTTGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGC 157065
|| | || || || ||| | || | | | | | || | ||| || || ||
Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGC 42170
Query 157066 TAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATT 157125
|| ||||||||| || ||||||| ||||| |||| | || ||||||| || |||||
Sbjct 42169 TAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATT 42110
Query 157126 GCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTA 157185
||||| ||||| ||| ||| |||||||||||| | ||| || | ||| || |
Sbjct 42109 ACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAA 42050
Query 157186 TAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228
| |||||| || || || || || ||||| ||| || |||
Sbjct 42049 AAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATG 42007
>seq3603
Length=2672878
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||||| || || || | || || || ||||| |||||||| ||
Sbjct 316357 CCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAA 316298
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| || || || || || || ||| |||||||||| |||||||| || ||
Sbjct 316297 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGA 316238
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| ||||| || | | || | ||||| | ||| || ||
Sbjct 316237 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 316178
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||||||||||| | ||||| || || ||||||||
Sbjct 316177 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131
>seq359
Length=456481
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046
|| ||||| || || ||||||||||| || |||| || | ||||| ||||| || ||
Sbjct 66544 GTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCA-TCTTCCAGTTGCTTGCC 66486
Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106
||| |||||||||| ||||| || ||||| || || || ||||| ||| || ||
Sbjct 66485 GGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTT 66426
Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166
| | || | || || | || || || || | ||| | ||||| || |||| ||
Sbjct 66425 CACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGT 66366
Query 143167 TTTTACGAATATTTGCATA 143185
|| ||||| || ||||||
Sbjct 66365 CTTCACGAAGATCTGCATA 66347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506928651189600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |