Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq466 113 5e-20 seq3603 86.0 6e-12 seq359 82.4 8e-11 >seq466 Length=100518 Score = 113 bits (124), Expect = 5e-20 Identities = 303/463 (65%), Gaps = 3/463 (1%) Strand=Plus/Minus Query 156769 CAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAA 156828 || ||| |||| || || | || ||| || | ||||||| ||||||| |||||| Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410 Query 156829 TAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACC 156888 ||| || | ||||| | ||||| | | || || || |||||||| || || || Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350 Query 156889 TTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGG 156948 ||| | ||||| || || || || || || | ||| ||||||||||| | | || Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290 Query 156949 GTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTG 157008 || | || |||||| |||||||||| | | ||| ||| ||| | Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230 Query 157009 CAATAGTTGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGC 157065 || | || || || ||| | || | | | | | || | ||| || || || Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGC 42170 Query 157066 TAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATT 157125 || ||||||||| || ||||||| ||||| |||| | || ||||||| || ||||| Sbjct 42169 TAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATT 42110 Query 157126 GCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTA 157185 ||||| ||||| ||| ||| |||||||||||| | ||| || | ||| || | Sbjct 42109 ACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAA 42050 Query 157186 TAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228 | |||||| || || || || || ||||| ||| || ||| Sbjct 42049 AAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATG 42007 >seq3603 Length=2672878 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| || || || | || || || ||||| |||||||| || Sbjct 316357 CCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAA 316298 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || || || || ||| |||||||||| |||||||| || || Sbjct 316297 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGA 316238 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| || | | || | ||||| | ||| || || Sbjct 316237 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 316178 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| | ||||| || || |||||||| Sbjct 316177 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131 >seq359 Length=456481 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || ||||| || || ||||||||||| || |||| || | ||||| ||||| || || Sbjct 66544 GTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCA-TCTTCCAGTTGCTTGCC 66486 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| |||||||||| ||||| || ||||| || || || ||||| ||| || || Sbjct 66485 GGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTT 66426 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | || || | || || || || | ||| | ||||| || |||| || Sbjct 66425 CACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGT 66366 Query 143167 TTTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 66365 CTTCACGAAGATCTGCATA 66347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506928651189600