Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3134 233 3e-56 seq3255 181 2e-40 seq3023 154 2e-32 >seq3134 Length=2474545 Score = 233 bits (258), Expect = 3e-56 Identities = 614/918 (67%), Gaps = 52/918 (6%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| |||| || || ||||| || || || || |||||||| ||||| ||| || | Sbjct 573367 AGGCCGAGGCATCATTCTGGACTGTGGAGGAAGTGGATCTGTCTAAGGATCTGACTGACT 573426 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | || | || || | ||||| | || || || || || ||||||| |||| Sbjct 573427 GGG---CACGCCTAACAGACAACGAGCGTCATTTCATTTCACATGTTCTGGCCTTTTTTG 573483 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACC 125216 ||| ||||||||| || || ||||| |||||| | || || || || ||| | Sbjct 573484 CCGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGTTTTAGCCAGGAAGTTCAG- 573542 Query 125217 ATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGA 125275 ||| |||||| |||| |||| || || || || || || ||||| || |||||||| Sbjct 573543 ATTACAGAGGC-TCGTTGCTTCTATGGCTTTCAGATAGCCATGGAGAATGTCCACTCGGA 573601 Query 125276 AATGTACTCTACACTGATTGACATGTACATTCGCGATCCG---CAACGTAAACACATGCT 125332 ||||||| |||||||||| || || ||||||||| || ||| | | || Sbjct 573602 AATGTACAGCGTCCTGATTGACACATATATACGCGATCCGCATCAGCGTGATTA---TCT 573658 Query 125333 CTTTAACGCAATCGACACGGTGCCGTC---TATACGTAAAAAGGCTCAATGGGTGATTCG 125389 ||||| ||||| || || ||||| | || || ||||| | |||| | || Sbjct 573659 ATTTAATGCAATTGAAACAATGCCGGCAGTTAAGCG---GAAGGCCGACTGGGCGCTTTC 573715 Query 125390 GTGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGT 125446 ||||| || | ||| | | || | || | | | ||||| || || || Sbjct 573716 TTGGAT--AT-CCTCTAAGGCAGCTAACTTTGGGGAGCGCATCATCGCATTTGCTGCTGT 573772 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 ||||||||||||||| || || ||||| | ||||||||||| |||||||| || || Sbjct 573773 TGAGGGCATCTTCTTTAGCGGCAGCTTTGCTTCTATCTTTTGGCTGAAGAAGCGTGGCCT 573832 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566 |||||||| || || | ||||| | || || || |||||||| || || || || Sbjct 573833 TATGCCCGGCCTCACTTTCTCGAACGAACTGATCTCCCGCGACGAGGGACTGCATTGCGA 573892 Query 125567 CTTTGCCATTCTACTGTTTC-GCAACT--ATCTGCGTCCCGAGTGCAGATCCAGCGATGA 125623 |||||| | || |||| | ||| | | ||||||| |||||| |||| Sbjct 573893 CTTTGCTGTCCTGATGTTCCAGCATTTGGTGCAGCGTCCC---TGCAGA--GAGCG---- 573943 Query 125624 AAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATC 125683 |||| | || | ||||||| || | || ||||| |||||||| || || | Sbjct 573944 ---CATCATTGAGATCATCTCCGATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGC 574000 Query 125684 CCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGT 125743 || ||||||| |||| |||||||| ||| || |||| ||| || || |||||||| Sbjct 574001 ACTGCCGGTCAATTTGATCGGCATGAATTGCGCACTTATGTCCGAATATATTGAGTTTGT 574060 Query 125744 GGCAGATCGTCTACTGTACGAGTTGA--TTGG---CCGCAAGATTTACAACGCCAAGAAT 125798 ||| |||||||| ||| ||||| |||| | |||| | |||||| | |||||| Sbjct 574061 GGCCGATCGTCTGCTG-----GTTGAACTTGGGGTCGGCAAACTGTACAACACAAAGAAT 574115 Query 125799 CCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAG 125858 || ||| |||||| | || || | || || || ||||| || || ||||| || Sbjct 574116 CCGTTTACATTCATGGAAATGATTTCGTTGGACGGCAAAACCAATTTCTTTGAGAAAAAA 574175 Query 125859 GTCAGCGAGTACAAACGCTACGGTGTCGGTGTCAATTTG-GAGGATAATGTGTTTAAGAT 125917 || |||| || | || || ||| |||| | | ||||||||||||| | Sbjct 574176 GTGGGCGAATATCAGCGAATGGGCGTC-ACATCAAATCGTTTAGATAATGTGTTTACACT 574234 Query 125918 TAGTGAGGATTTTTAGAG 125935 | || |||||| ||||| Sbjct 574235 TGATGCGGATTTCTAGAG 574252 >seq3255 Length=2102469 Score = 181 bits (200), Expect = 2e-40 Identities = 381/569 (67%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||| |||||||| ||||| | || ||||||||||| || || ||| Sbjct 857921 TTGCGGAAGAAGATGACGCCGGCTCGCGGACCGCGCAGCGTCTTGTGCGTCGTGGTCGTC 857862 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| |||||||| || || || | | | || | | || || | | Sbjct 857861 ACAATGTCGGCGTACTCAAATGGTGAGGGTATCTGCTCGGCGGCCACGAGTCCAGCCACG 857802 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| | | |||| | | || |||| ||||| ||| | Sbjct 857801 TGCGCCATGTCGGCCATCAGATATGCGCCGACCTCGTCACAGATCTTGCGGAAGCGTGCA 857742 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | || | |||||| | |||| || ||||| | | || ||| Sbjct 857741 TAGTCCAGCAGGCGCGAATAGCACGAGATGCCCGCAATGATAATCTGCGGACGGAAATTT 857682 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 |||| ||| || ||||| ||||||||| || || || | |||| |||||| || Sbjct 857681 CTGGCCGCCTCTGCCAGTTTTTCATAGTCGATGATGCCCGTTTCGGGATTCACCTTATAG 857622 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| || || |||| |||||||| || | || ||| ||| ||| Sbjct 857621 GGCATGCTCTCAAAGAAGATGGATGTAGCCGAGATTTTCTTGTTTGGCGTAAAGAAGCCG 857562 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||| || || || ||||||||||| || ||||| || | | |||| || | Sbjct 857561 TGCGTCAAATGTCCACCATCGGGCAGATCCAGGCCCATAATACGATCGTGTGGACGCAGC 857502 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || |||||| |||| | |||||| |||||| || || || || ||| || ||| Sbjct 857501 ACGCCCGTGTACGCGGCCAGATTGGCCGGCGAGCCGGAATAGGGCTGAACATTGACGCCC 857442 Query 127570 CATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGATG 127629 |||||| | | || ||||||| || | || ||| || || ||| || Sbjct 857441 CATTCGCTGGCATCCAGATTGAACAGATGAAGGCCGCGTGTCTGAGCCAGGCATTCAATC 857382 Query 127630 CGATCGATAAACTCGTTACCACCATAGTA 127658 |||| ||||| | || ||||||||||| Sbjct 857381 TGATCAATAAATTGATTGCCACCATAGTA 857353 >seq3023 Length=5802038 Score = 154 bits (170), Expect = 2e-32 Identities = 312/459 (68%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || |||||||| || || || |||||||||||| | |||| ||| || ||||| Sbjct 3647415 GGGGATCTGGGTCCGGTTTATGGATTCCAGTGGCGTCACTTTGGCGCCGAGTATCGCACT 3647474 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185 ||||| ||| || || | || ||||||||||| ||||| ||| | | || | || | Sbjct 3647475 TGCGATGAC-GATTACACCGGCCAGGGTGTTGACCAATTACAGCAAGTGATACATACGAT 3647533 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 |||||||| | ||| | | || | |||| | | |||||||| ||| | | Sbjct 3647534 ACGAACCAATCCCTCGGATCGTCGCATTATCATGTCCGCCTGGAATCCGATGGATATACC 3647593 Query 70246 CCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTT-TTACTC-----GTACGATGG 70299 | ||||||| ||||| ||||| || || ||| |||||| || || || | | || Sbjct 3647594 CAAAATGGCGCTACCGCCGTGCCATTGCCTGGTTCAGTTCTTTGTCTCGCAGTCCAAGGG 3647653 Query 70300 CAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAA 70359 | ||||||| ||| | ||||| | || || |||||||| |||||||| ||||| || Sbjct 3647654 CGAATTGTCCTGCCAGCTATATCAACGCAGCGCTGACATGGGTCTCGGTGTTCCCTTCAA 3647713 Query 70360 CATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCA 70419 |||||| |||| || || | || | | || || || | || || ||||| | Sbjct 3647714 CATTGCCTCCTATGCTCTGCTCACTTATTTAATAGCCCATGTGACGGGTCTGAAGCCCGG 3647773 Query 70420 CGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAA 70479 || ||| | |||||||| ||||| |||||||| ||| | || || || || || | | Sbjct 3647774 TGAATTCATCCACACCATAGGCGATGCTCACGTTTATCTTAACCATATAGAACCGCTGCA 3647833 Query 70480 GGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCT 70518 | ||| | |||| || | |||||||||||||| Sbjct 3647834 GCAGCAGATAAAACGTAGCCCCAAGCCTTTTCCCAAGCT 3647872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740933868362800