Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3289 98.7 7e-16 seq359 84.2 2e-11 >seq3289 Length=20206255 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || ||||| || || ||||| || || | | | ||||| Sbjct 14369586 ACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCC 14369645 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||||||| | || ||||| || || || ||||||||||||||||| Sbjct 14369646 AACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 14369705 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || |||||||| ||| || || | || ||||| ||| Sbjct 14369706 ATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 14369765 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||||||||| Sbjct 14369766 CCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq359 Length=456481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAA--TTCTCGCGTCTT 15212 || || || ||||| || || || || |||||||||| || | || | | | |||| Sbjct 66556 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAAT--CTGACAACGTGCGTCCATCTT 66499 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | | ||| ||||| || | |||| ||| || ||||| || ||||| || ||||| Sbjct 66498 CCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCT 66439 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| ||| ||| || | || |||||||| ||| || || || | |||||||| | Sbjct 66438 GAATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCT 66379 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| || || || || || |||||| Sbjct 66378 TTCCCGTCAGGGTCTTCACGAAGATCTGCATA 66347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362119477781730