Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3289 104 1e-17 >seq3289 Length=20206255 Score = 104 bits (114), Expect = 1e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| || |||||||| || |||||||| ||||| | || | || || Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 14369644 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| ||||| ||| || |||||||| ||||| || | || || |||||||| || Sbjct 14369645 CAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 14369704 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || | | || || || |||| || || ||||| || || || Sbjct 14369705 GATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 14369764 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || |||||||| ||||||||||| Sbjct 14369765 ACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318725034569940