Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3289 176 1e-38 seq359 132 1e-25 seq3134 109 1e-18 >seq3289 Length=20206255 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || ||||| |||||||| ||||| |||||||| || || | ||| ||| Sbjct 14369583 AGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCT 14369642 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || || ||||| ||||||| | ||| ||||| ||||| ||||||||||| ||| Sbjct 14369643 TCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 14369702 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| ||||| ||||| || | |||||| ||||| ||||| || || || ||| Sbjct 14369703 TGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 14369762 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || ||||||||||| || ||||| Sbjct 14369763 TTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq359 Length=456481 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| ||||| | ||| ||||| ||||| || || Sbjct 66088 GTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCG 66029 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| ||||| || || || || ||||| || || Sbjct 66028 GCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 65969 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| ||| || ||||| || || || ||||| || || | ||| Sbjct 65968 ACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTT 65909 Query 104543 TTTACAAATATCTGCATTTTG 104563 ||||| || |||||||||||| Sbjct 65908 TTTACGAAGATCTGCATTTTG 65888 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || || || | || | || ||||| ||||| || || Sbjct 66544 GTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTCCAGTTGCTTGCCG 66485 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || ||||| ||||| || || ||||||||||| || || Sbjct 66484 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTC 66425 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| ||||| || ||||| || ||||| ||||| || || || || Sbjct 66424 ACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTC 66365 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 66364 TTCACGAAGATCTGCAT 66348 >seq3134 Length=2474545 Score = 109 bits (120), Expect = 1e-18 Identities = 356/544 (65%), Gaps = 23/544 (4%) Strand=Plus/Plus Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 ||||||| || || || |||||||| || ||||| ||||||||| | || | | || Sbjct 573366 CAGGCCGAGGCATCATTCTGGACTGTGGAGGAAGTGGATCTGTCTAAGGATCTGACTGAC 573425 Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAG---ATTT-ATATCTTATATTCTTGCGTTTTT 268866 ||| | ||| |||| || || |||| || || || |||| || ||||| Sbjct 573426 TGGGCACGCCTAA---CAGAC-AACGAGCGTCATTTCATTTCACATGTTCTGGCCTTTTT 573481 Query 268867 TGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACA 268926 ||| | ||||| || |||||||| ||||| || ||| || | || || || || Sbjct 573482 TGCCGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGTTTTAGCCAGGAAGTTCA 573541 Query 268927 GATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGA 268986 |||| | || || | || || || || || |||||||| || || ||| | || || || Sbjct 573542 GATTACAGAGGCTCGTTGCTTCTATGGCTTTCAGATAGCCATGGAGAATGTCCACTCGGA 573601 Query 268987 GATGTACAGTCTATTAATAGATACTTATATAGATGAT----AACAACGAAAAGAAAAGAC 269042 |||||||| | | || || || |||||| ||| | || || | | | Sbjct 573602 AATGTACAGCGTCCTGATTGACACATATATACGCGATCCGCATCAGCGTGATTAT----C 573657 Query 269043 TATTTTCTTCTATGAGAACTATG--GACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAA 269100 ||||| | | || ||| ||| | | || | || || | || ||||| || Sbjct 573658 TATTTAATGCAATTGAAACAATGCCGGCAGT-TAAGCGGAAGGCC-GACTGGGCGCTTTC 573715 Query 269101 ATGGATAAACGATAGCGCGCCTTAC---GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGA 269157 |||||| | || || || || || || | | | || ||||| ||||| || Sbjct 573716 TTGGATATCCTCTAAGGCAGCTAACTTTGGGGAGCGCATCATCGCATTTGCTGCTGTTGA 573775 Query 269158 AGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTAT 269217 || || |||||| || ||||| ||||||||||| ||||||| | |||||||| Sbjct 573776 GGGCATCTTCTTTAGCGGCAGCTTTGCTTCTATCTTTTGGCTGAAGAAGCGTGGCCTTAT 573835 Query 269218 GCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTT 269277 ||| || | |||||||| |||||| |||| | | ||||| || | || |||||||| Sbjct 573836 GCCCGGCCTCACTTTCTCGAACGAACTGATCTCCCGCGACGAGGGACTGCATTGCGACTT 573895 Query 269278 CGCT 269281 ||| Sbjct 573896 TGCT 573899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151198801489240