Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq3289 138 1e-27
>seq3289
Length=20206255
Score = 138 bits (152), Expect = 1e-27
Identities = 190/261 (73%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298
||| || ||||| || || || ||||| || |||| || ||||| || |||| ||
Sbjct 8052186 TCCAGTTGAACCAAAACCCGACTCGCCTCGTACGGTATCATCCAATTTGTCGACCTGTTC 8052245
Query 5299 AA-CTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAA 5357
| || | | || |||||||| ||||| || | ||||| || | || || ||| |
Sbjct 8052246 CAGCTCCGGAATG-GATATGCGCTCGCAAATGAATTGAGCAATGCGATCACCGCGCTTGA 8052304
Query 5358 CCTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTC 5415
|||||||||| ||| |||||| ||||||| || || || | |||||||||||| ||
Sbjct 8052305 CCTCAAAGTC--TGTGTCCGAATGATTAAACAAGACAACACCCAGATTGCCTCGGTAATC 8052362
Query 5416 TTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGG 5475
|| || | ||||||||||||||||||||| |||| || || || ||||||||||| ||
Sbjct 8052363 CTCATCAACAACGCCAGCGCCCACGTCGATGAAGTTCTTCACGGCCAGGCCGGAACGAGG 8052422
Query 5476 TGCTATGCGTCCGTAGCAACC 5496
|| | | || ||| ||||
Sbjct 8052423 CGCCACTCTGCCATAGGAACC 8052443
Score = 125 bits (138), Expect = 6e-24
Identities = 233/340 (69%), Gaps = 14/340 (4%)
Strand=Plus/Plus
Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298
||| || ||||| || || | ||||| || ||||| || ||||| || ||| ||
Sbjct 8051706 TCCAGTTGAACCAAAACCCGCCTCGCCCCGCTCGGTATCATCCAATTTGTCCTCCTGTTC 8051765
Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358
| |||| | | ||||| ||||| || | ||| || || | ||||| ||| ||
Sbjct 8051766 CAGCTCTGGATAGAAGATGCGCTCGCAAATGAACTGTGCAATGCGATCTCCGCGCTTGAC 8051825
Query 5359 CTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416
||||||||| ||| |||||| ||||||| || || || | || || ||||||||
Sbjct 8051826 CTCAAAGTC--TGTGTCCGAATGATTAAACAAGACAACACCCAGGTTACCACGGTAGTCC 8051883
Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476
||||| | ||| || || |||||||||||||||| ||| || || || |||||||| ||
Sbjct 8051884 TCGTCAACAACTCCGGCACCCACGTCGATAAAGTTTTTCACGGCCAGACCGGAACGGGGG 8051943
Query 5477 GCTATGCGTCCGTAGCAACCAGGTGGGAGCTTTATCAGAAGGTCAGTAAACACTACGCAA 5536
|| | | || ||| | || ||| |||| | | |||| ||||| || | |||
Sbjct 8051944 GCCACTCTACCATAGGAGCCCTCTGGCAGCTGCACCTGAAGATCAGT-----CTTCACAA 8051998
Query 5537 CTGCAATGCGAAGGGACGACAC-----AGTCGTACGCGCT 5571
|| ||| | | |||| ||| ||||||| |||||
Sbjct 8051999 TAGCCTTGCCACGTGACGGCACCTTCAAGTCGTAGGCGCT 8052038
Score = 105 bits (116), Expect = 6e-18
Identities = 196/286 (69%), Gaps = 4/286 (1%)
Strand=Plus/Plus
Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299
|| || ||||| || || | ||||| || ||||| || ||||| || ||||||
Sbjct 8051227 CCAGTTGAACCAAAACCTGCCTCGCCACGCTCGGTATCATCCAACTTGTCTTCCTCTTTT 8051286
Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359
| || | |||| | ||||| || | |||||| || | ||||| ||| |||
Sbjct 8051287 GGCTCCGGATAGAATATAAGCTCGCAAATGAACTGAGCAATGCGATCTCCGCGCTTGACC 8051346
Query 5360 TCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417
||||||| | || |||||| ||||||| || || || | || || |||||||| |
Sbjct 8051347 TCAAAGT--CAGTGTCCGAATGATTAAACAAGACAACACCCAGGTTACCGCGGTAGTCCT 8051404
Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477
|||| | ||| || || ||||| ||||| |||| || || || || |||||||| || |
Sbjct 8051405 CGTCAACAACACCGGCACCCACATCGATGAAGTTCTTTACGGCCAGACCGGAACGGGGGG 8051464
Query 5478 CTATGCGTCCGTAGCAACCAGGTGGGAGCTTTATCAGAAGGTCAGT 5523
||| | || ||| | || ||| |||| | | |||| |||||
Sbjct 8051465 CTACTCTCCCATAGGAGCCCTCTGGCAGCTGCACCTGAAGATCAGT 8051510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447674674213600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |