Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq3289 138 1e-27 >seq3289 Length=20206255 Score = 138 bits (152), Expect = 1e-27 Identities = 190/261 (73%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298 ||| || ||||| || || || ||||| || |||| || ||||| || |||| || Sbjct 8052186 TCCAGTTGAACCAAAACCCGACTCGCCTCGTACGGTATCATCCAATTTGTCGACCTGTTC 8052245 Query 5299 AA-CTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAA 5357 | || | | || |||||||| ||||| || | ||||| || | || || ||| | Sbjct 8052246 CAGCTCCGGAATG-GATATGCGCTCGCAAATGAATTGAGCAATGCGATCACCGCGCTTGA 8052304 Query 5358 CCTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTC 5415 |||||||||| ||| |||||| ||||||| || || || | |||||||||||| || Sbjct 8052305 CCTCAAAGTC--TGTGTCCGAATGATTAAACAAGACAACACCCAGATTGCCTCGGTAATC 8052362 Query 5416 TTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGG 5475 || || | ||||||||||||||||||||| |||| || || || ||||||||||| || Sbjct 8052363 CTCATCAACAACGCCAGCGCCCACGTCGATGAAGTTCTTCACGGCCAGGCCGGAACGAGG 8052422 Query 5476 TGCTATGCGTCCGTAGCAACC 5496 || | | || ||| |||| Sbjct 8052423 CGCCACTCTGCCATAGGAACC 8052443 Score = 125 bits (138), Expect = 6e-24 Identities = 233/340 (69%), Gaps = 14/340 (4%) Strand=Plus/Plus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298 ||| || ||||| || || | ||||| || ||||| || ||||| || ||| || Sbjct 8051706 TCCAGTTGAACCAAAACCCGCCTCGCCCCGCTCGGTATCATCCAATTTGTCCTCCTGTTC 8051765 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 | |||| | | ||||| ||||| || | ||| || || | ||||| ||| || Sbjct 8051766 CAGCTCTGGATAGAAGATGCGCTCGCAAATGAACTGTGCAATGCGATCTCCGCGCTTGAC 8051825 Query 5359 CTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416 ||||||||| ||| |||||| ||||||| || || || | || || |||||||| Sbjct 8051826 CTCAAAGTC--TGTGTCCGAATGATTAAACAAGACAACACCCAGGTTACCACGGTAGTCC 8051883 Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476 ||||| | ||| || || |||||||||||||||| ||| || || || |||||||| || Sbjct 8051884 TCGTCAACAACTCCGGCACCCACGTCGATAAAGTTTTTCACGGCCAGACCGGAACGGGGG 8051943 Query 5477 GCTATGCGTCCGTAGCAACCAGGTGGGAGCTTTATCAGAAGGTCAGTAAACACTACGCAA 5536 || | | || ||| | || ||| |||| | | |||| ||||| || | ||| Sbjct 8051944 GCCACTCTACCATAGGAGCCCTCTGGCAGCTGCACCTGAAGATCAGT-----CTTCACAA 8051998 Query 5537 CTGCAATGCGAAGGGACGACAC-----AGTCGTACGCGCT 5571 || ||| | | |||| ||| ||||||| ||||| Sbjct 8051999 TAGCCTTGCCACGTGACGGCACCTTCAAGTCGTAGGCGCT 8052038 Score = 105 bits (116), Expect = 6e-18 Identities = 196/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || ||||| || || | ||||| || ||||| || ||||| || |||||| Sbjct 8051227 CCAGTTGAACCAAAACCTGCCTCGCCACGCTCGGTATCATCCAACTTGTCTTCCTCTTTT 8051286 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | || | |||| | ||||| || | |||||| || | ||||| ||| ||| Sbjct 8051287 GGCTCCGGATAGAATATAAGCTCGCAAATGAACTGAGCAATGCGATCTCCGCGCTTGACC 8051346 Query 5360 TCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 ||||||| | || |||||| ||||||| || || || | || || |||||||| | Sbjct 8051347 TCAAAGT--CAGTGTCCGAATGATTAAACAAGACAACACCCAGGTTACCGCGGTAGTCCT 8051404 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||| | ||| || || ||||| ||||| |||| || || || || |||||||| || | Sbjct 8051405 CGTCAACAACACCGGCACCCACATCGATGAAGTTCTTTACGGCCAGACCGGAACGGGGGG 8051464 Query 5478 CTATGCGTCCGTAGCAACCAGGTGGGAGCTTTATCAGAAGGTCAGT 5523 ||| | || ||| | || ||| |||| | | |||| ||||| Sbjct 8051465 CTACTCTCCCATAGGAGCCCTCTGGCAGCTGCACCTGAAGATCAGT 8051510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447674674213600