Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq3289 120 3e-22
>seq3289
Length=20206255
Score = 120 bits (132), Expect = 3e-22
Identities = 243/355 (68%), Gaps = 7/355 (2%)
Strand=Plus/Plus
Query 5508 TGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCCACAT 5567
|| ||| || ||| || |||||| | | ||||| |||| | |||| ||||| |
Sbjct 8052192 TGAACCAAAACCCGACT-CGCCTCGTACGGTATCATCCAATTTGTCGACCTGTTCCAGCT 8052250
Query 5568 CGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGA 5627
| || | | ||||||||| || | || || || || || || ||| ||||| |
Sbjct 8052251 CCGGAATGGATATGCGCTCGCAAATGAATTGAGCAATGCGATCACCGCGCTTGACCTCAA 8052310
Query 5628 AATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTC 5685
| || |||| ||||| || |||| || || |||| ||||| ||||| || | ||
Sbjct 8052311 AGTC--TGTGTCCGAATGATTAAACAAGACAACACCCAGATTGCCTCGGTAATCCTCATC 8052368
Query 5686 TATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCAC 5745
| ||||| ||||||||||||||||||| ||| || ||||||||||| || || |||||
Sbjct 8052369 AACAACGCCAGCGCCCACGTCGATGAAGTTCTTCACGGCCAGGCCGGAACGAGGCGCCAC 8052428
Query 5746 GCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGCC-GAC 5804
| ||| ||| | || || || | ||| | ||| || || || | || | ||| ||
Sbjct 8052429 TCTGCCATAGGAACCCTCTGGCACCTGAACCTGGAGATCGGTCTTGA-CAATAGCCTTAC 8052487
Query 5805 CGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTCGTACCCGGCCGCCCG 5859
| | || || || ||| |||| | ||||||| | ||| | ||||| || ||
Sbjct 8052488 CACGGGCTGGAACTATGAGGTCGTAGGCGCTGCGCAAGTCAAAGCCGGCGGCTCG 8052542
Score = 111 bits (122), Expect = 1e-19
Identities = 198/283 (70%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 5508 TGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCCACAT 5567
|| ||| || |||||| |||| | || ||||| |||| || ||| ||||| |
Sbjct 8051712 TGAACCAAAACCCGCCT-CGCCCCGCTCGGTATCATCCAATTTGTCCTCCTGTTCCAGCT 8051770
Query 5568 CGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCG 5626
| || | | || ||||||||| || | ||| || || || || || ||| |||||
Sbjct 8051771 CTGGATA-GAAGATGCGCTCGCAAATGAACTGTGCAATGCGATCTCCGCGCTTGACCTCA 8051829
Query 5627 AAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGT 5684
|| || |||| ||||| || |||| || || |||| ||| || |||||||| |||
Sbjct 8051830 AAGTC--TGTGTCCGAATGATTAAACAAGACAACACCCAGGTTACCACGGTAGTCCTCGT 8051887
Query 5685 CTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCA 5744
| | || || || ||||||||||| |||| || || ||||| ||||| ||||| ||||
Sbjct 8051888 CAACAACTCCGGCACCCACGTCGATAAAGTTTTTCACGGCCAGACCGGAACGGGGGGCCA 8051947
Query 5745 CGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787
| | || ||| | || || || ||||| | ||| || || ||
Sbjct 8051948 CTCTACCATAGGAGCCCTCTGGCAGCTGCACCTGAAGATCAGT 8051990
Score = 107 bits (118), Expect = 2e-18
Identities = 149/207 (72%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 5583 GCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGA 5642
||||||| || | ||| || || || || || ||| ||||| || || ||| ||||
Sbjct 8051306 GCTCGCAAATGAACTGAGCAATGCGATCTCCGCGCTTGACCTCAAAGTCAGTGT--CCGA 8051363
Query 5643 AG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700
| || |||| || || |||| ||| ||||||||||| |||| | || || || ||
Sbjct 8051364 ATGATTAAACAAGACAACACCCAGGTTACCGCGGTAGTCCTCGTCAACAACACCGGCACC 8051423
Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760
||| |||||||||| ||| || ||||| ||||| ||||| || || | || ||| | ||
Sbjct 8051424 CACATCGATGAAGTTCTTTACGGCCAGACCGGAACGGGGGGCTACTCTCCCATAGGAGCC 8051483
Query 5761 ATCGGGAAGCTGTATCTGCAGGTCCGT 5787
|| || ||||| | ||| || || ||
Sbjct 8051484 CTCTGGCAGCTGCACCTGAAGATCAGT 8051510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429983485373360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |