Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3289 120 3e-22 >seq3289 Length=20206255 Score = 120 bits (132), Expect = 3e-22 Identities = 243/355 (68%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 5508 TGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCCACAT 5567 || ||| || ||| || |||||| | | ||||| |||| | |||| ||||| | Sbjct 8052192 TGAACCAAAACCCGACT-CGCCTCGTACGGTATCATCCAATTTGTCGACCTGTTCCAGCT 8052250 Query 5568 CGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGA 5627 | || | | ||||||||| || | || || || || || || ||| ||||| | Sbjct 8052251 CCGGAATGGATATGCGCTCGCAAATGAATTGAGCAATGCGATCACCGCGCTTGACCTCAA 8052310 Query 5628 AATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTC 5685 | || |||| ||||| || |||| || || |||| ||||| ||||| || | || Sbjct 8052311 AGTC--TGTGTCCGAATGATTAAACAAGACAACACCCAGATTGCCTCGGTAATCCTCATC 8052368 Query 5686 TATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCAC 5745 | ||||| ||||||||||||||||||| ||| || ||||||||||| || || ||||| Sbjct 8052369 AACAACGCCAGCGCCCACGTCGATGAAGTTCTTCACGGCCAGGCCGGAACGAGGCGCCAC 8052428 Query 5746 GCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGCC-GAC 5804 | ||| ||| | || || || | ||| | ||| || || || | || | ||| || Sbjct 8052429 TCTGCCATAGGAACCCTCTGGCACCTGAACCTGGAGATCGGTCTTGA-CAATAGCCTTAC 8052487 Query 5805 CGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTCGTACCCGGCCGCCCG 5859 | | || || || ||| |||| | ||||||| | ||| | ||||| || || Sbjct 8052488 CACGGGCTGGAACTATGAGGTCGTAGGCGCTGCGCAAGTCAAAGCCGGCGGCTCG 8052542 Score = 111 bits (122), Expect = 1e-19 Identities = 198/283 (70%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 5508 TGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCCACAT 5567 || ||| || |||||| |||| | || ||||| |||| || ||| ||||| | Sbjct 8051712 TGAACCAAAACCCGCCT-CGCCCCGCTCGGTATCATCCAATTTGTCCTCCTGTTCCAGCT 8051770 Query 5568 CGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCG 5626 | || | | || ||||||||| || | ||| || || || || || ||| ||||| Sbjct 8051771 CTGGATA-GAAGATGCGCTCGCAAATGAACTGTGCAATGCGATCTCCGCGCTTGACCTCA 8051829 Query 5627 AAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGT 5684 || || |||| ||||| || |||| || || |||| ||| || |||||||| ||| Sbjct 8051830 AAGTC--TGTGTCCGAATGATTAAACAAGACAACACCCAGGTTACCACGGTAGTCCTCGT 8051887 Query 5685 CTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCA 5744 | | || || || ||||||||||| |||| || || ||||| ||||| ||||| |||| Sbjct 8051888 CAACAACTCCGGCACCCACGTCGATAAAGTTTTTCACGGCCAGACCGGAACGGGGGGCCA 8051947 Query 5745 CGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 | | || ||| | || || || ||||| | ||| || || || Sbjct 8051948 CTCTACCATAGGAGCCCTCTGGCAGCTGCACCTGAAGATCAGT 8051990 Score = 107 bits (118), Expect = 2e-18 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 5583 GCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGA 5642 ||||||| || | ||| || || || || || ||| ||||| || || ||| |||| Sbjct 8051306 GCTCGCAAATGAACTGAGCAATGCGATCTCCGCGCTTGACCTCAAAGTCAGTGT--CCGA 8051363 Query 5643 AG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 | || |||| || || |||| ||| ||||||||||| |||| | || || || || Sbjct 8051364 ATGATTAAACAAGACAACACCCAGGTTACCGCGGTAGTCCTCGTCAACAACACCGGCACC 8051423 Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||| |||||||||| ||| || ||||| ||||| ||||| || || | || ||| | || Sbjct 8051424 CACATCGATGAAGTTCTTTACGGCCAGACCGGAACGGGGGGCTACTCTCCCATAGGAGCC 8051483 Query 5761 ATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || || ||||| | ||| || || || Sbjct 8051484 CTCTGGCAGCTGCACCTGAAGATCAGT 8051510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429983485373360