Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3603 98.7 8e-16 seq3378 95.1 1e-14 seq3289 82.4 6e-11 >seq3603 Length=2672878 Score = 98.7 bits (108), Expect = 8e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||||||||||||||| || | || || || | |||||||||||||| ||| | Sbjct 316322 CTCCTTTTGAATGTTGTAGTCCGA-AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAA 316264 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||||||| || | || ||| ||||| ||||| ||||| | Sbjct 316263 AGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACAT 316204 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | ||||| || | | ||| ||| | || ||||| || |||||||| ||||||| Sbjct 316203 TCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCA 316144 Query 48714 CAAAAATCTGCAT 48726 |||| || ||||| Sbjct 316143 CAAAGATTTGCAT 316131 >seq3378 Length=5191987 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || | ||| || | |||||||||||||| ||| || | Sbjct 4218013 CTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAA 4217954 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || |||||||||||||| || | || ||||||||| || || ||| | | Sbjct 4217953 GATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATT 4217894 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | |||||||||| | |||| ||| | || ||||| || || || | || || || Sbjct 4217893 CTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGAC 4217834 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 4217833 GAAGATCTGCAT 4217822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || | ||| |||||| || |||||||| || | ||| || | ||||| Sbjct 4216891 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4216832 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || |||||||||||||| || | || ||||||||| Sbjct 4216831 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4216772 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | |||||||||| | |||| ||| | || ||||| || Sbjct 4216771 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4216712 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || || || || |||||||| Sbjct 4216711 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || | ||| |||||| || |||||||| || | ||| || | ||||| Sbjct 4217575 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4217516 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || |||||||||||||| || | || ||||||||| Sbjct 4217515 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4217456 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | |||||||||| | |||| ||| | || ||||| || Sbjct 4217455 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4217396 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || || || || |||||||| Sbjct 4217395 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 4217366 >seq3289 Length=20206255 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| | || ||| || || || ||||| |||| || || || | || | Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGA-AAGGGTGCGACCATCTT 14369643 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| |||||| || || ||||||||||||||||||| || | | ||| |||||| Sbjct 14369644 CCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCT 14369703 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || || | | | | |||||||| | | || ||| | || ||||| | Sbjct 14369704 GGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCT 14369763 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 |||| ||||| ||||| |||||||| |||||||| Sbjct 14369764 TACCCGTGAGGGTTTTTACAAAAATTTGCATCGT 14369797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421181736993530