Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3169 125 4e-24 seq3191 120 2e-22 seq3297 111 8e-20 >seq3169 Length=10161210 Score = 125 bits (138), Expect = 4e-24 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| | ||| || ||||| | ||||||||||| |||||||||| ||||||||| Sbjct 2960186 AAATAAAAAATAAAACAAAAAGTAGCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 2960127 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||| |||||||||||||||||||||| Sbjct 2960126 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 2960084 >seq3191 Length=20611582 Score = 120 bits (132), Expect = 2e-22 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 11427 GGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| || || || |||| | || ||||||||||| |||||||||| ||||||| Sbjct 1836800 GGAAAATTATAAAAAAAAAAATGTAAACTTGGCCCATGAGGGGATCGAACCCGCGACCTT 1836859 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 1836860 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1836902 Score = 120 bits (132), Expect = 2e-22 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || || ||||||| ||| |||||||||| |||||||||| ||||||||||||||||| Sbjct 4781753 AAATATTAAAAAAGCAATTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTA 4781694 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||| ||||||||||||||| Sbjct 4781693 GCACGACGCTCTAACCAGCTGAGCTAATGGGCC 4781661 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||||| | ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 4028263 AAAAAAAAATCTATCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 4028322 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 4028323 GACGCTCTAACCAGCTGAGCTAATGGGCC 4028351 Score = 111 bits (122), Expect = 8e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||| || || ||||||| | || ||||||||| |||||||||| ||||||||||| Sbjct 1830443 TATAAAAATA-TAAAAAAGAAGAACTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCG 1830501 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||| ||||||||||||||| Sbjct 1830502 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 1830540 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11445 AAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 4781907 AAAAATATAAATTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 4781966 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 4781967 GCTCTAACCAGCTGAGCTAATGGGCC 4781992 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 4782214 AATAAAAA--CATCCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 4782271 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 4782272 GACGCTCTAACCAGCTGAGCTAATGGGCC 4782300 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 4782382 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4782441 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 4782442 TGAGCTAATGGGCCG 4782456 >seq3297 Length=11907090 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | ||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 7842036 AAAAAAACTAAT-GGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 7842094 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||||||||| Sbjct 7842095 GCTCTAACCAGCTGAGCTAATGGGCCG 7842121 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261448080918280