Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3603 163 3e-35 seq3378 113 4e-20 seq3289 98.7 9e-16 seq359 95.1 1e-14 >seq3603 Length=2672878 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||||||| || |||||||| | ||| || || | ||| | | Sbjct 316345 CGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCA 316286 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||||||||| ||||||||||||||| Sbjct 316285 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTG 316226 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||||| ||| ||||||| | | ||||| || | |||||| Sbjct 316225 TCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATG 316166 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||||||||| ||||| Sbjct 316165 GTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131 >seq3378 Length=5191987 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||||||| || ||||| || | ||| || ||| || ||| |||||| Sbjct 4216891 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4216832 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| |||||| | ||||| || | ||||||||||| |||||||| || ||||| | Sbjct 4216831 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4216772 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || | | || || | | || || || | |||||||| || Sbjct 4216771 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4216712 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || || ||||||||||| Sbjct 4216711 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||||||| || ||||| || | ||| || ||| || ||| |||||| Sbjct 4217575 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4217516 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| || | ||||||||||| |||||||| || ||||| | Sbjct 4217515 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4217456 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || | | || || | | || || || | |||||||| || Sbjct 4217455 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4217396 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | || || || ||||||||||||| Sbjct 4217395 GCCAGTCAAGGTCTTGACGAAGATCTGCATGC 4217364 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||||||||| || ||||| || | ||| || ||| || ||| | Sbjct 4218036 CGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCA 4217977 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| || | ||||||||||| |||||||| || ||| Sbjct 4217976 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTG 4217917 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | || || | | || || || | |||||| Sbjct 4217916 TCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATG 4217857 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| | || || || ||||||||||||| Sbjct 4217856 GTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATGC 4217820 >seq3289 Length=20206255 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 |||||| ||||||||||| || || || | || || || | || || || ||| Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAG--AAAGGGTGCGACCATCT 14369642 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| ||| || || | || ||||| | ||||||||||||||||| ||||||||||| Sbjct 14369643 TCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 14369702 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || || || || ||| || || | | ||||| |||| |||||||| Sbjct 14369703 TGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 14369762 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||| || ||||| Sbjct 14369763 TTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq359 Length=456481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || |||||||| || | ||| ||||| || ||| ||| || Sbjct 66557 CACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTC 66498 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || ||| ||||||| | | ||||| |||||||| || || || ||||| | Sbjct 66497 CAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTG 66438 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||||| ||| | | || ||| | || || || | || ||||| || Sbjct 66437 AATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTT 66378 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || ||||| ||||||||||| Sbjct 66377 TCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | || || || | |||| ||| || Sbjct 66785 CACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTC 66726 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || ||| ||||||| | | ||||| ||||||||||| || || ||||| | Sbjct 66725 CAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 66666 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||||| ||| || || | | || || || | || ||||| || Sbjct 66665 GATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTT 66606 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || ||||| ||||||||||| Sbjct 66605 TCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| || || | |||| ||| ||| Sbjct 66100 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 66041 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| | ||||| | | ||||| |||||||| || || || ||||| | Sbjct 66040 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 65981 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| || || | | || || || | |||||||| ||| Sbjct 65980 ATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTT 65921 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||| || ||||||||||| Sbjct 65920 CCCGTCAAAGTTTTTACGAAGATCTGCAT 65892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448215382750800