Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq3603 163 3e-35
seq3378 113 4e-20
seq3289 98.7 9e-16
seq359 95.1 1e-14
>seq3603
Length=2672878
Score = 163 bits (180), Expect = 3e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||||||||||||||| || |||||||| | ||| || || | ||| | |
Sbjct 316345 CGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCA 316286
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || ||| ||||||| | | ||||||||||| |||||||||||||||
Sbjct 316285 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTG 316226
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||||| |||||||| ||| ||||||| | | ||||| || | ||||||
Sbjct 316225 TCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATG 316166
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || |||||||||||||| |||||
Sbjct 316165 GTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131
>seq3378
Length=5191987
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||||||| || ||||| || | ||| || ||| || ||| ||||||
Sbjct 4216891 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4216832
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| |||||| | ||||| || | ||||||||||| |||||||| || ||||| |
Sbjct 4216831 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4216772
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | || || | | || || || | |||||||| ||
Sbjct 4216771 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4216712
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| | || || || |||||||||||
Sbjct 4216711 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||||||| || ||||| || | ||| || ||| || ||| ||||||
Sbjct 4217575 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 4217516
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || ||| | ||||| || | ||||||||||| |||||||| || ||||| |
Sbjct 4217515 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4217456
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | || || | | || || || | |||||||| ||
Sbjct 4217455 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 4217396
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||| | || || || |||||||||||||
Sbjct 4217395 GCCAGTCAAGGTCTTGACGAAGATCTGCATGC 4217364
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| |||||||||||||| || ||||| || | ||| || ||| || ||| |
Sbjct 4218036 CGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCA 4217977
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || ||| | ||||| || | ||||||||||| |||||||| || |||
Sbjct 4217976 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTG 4217917
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| || | | || || | | || || || | ||||||
Sbjct 4217916 TCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATG 4217857
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || ||||| | || || || |||||||||||||
Sbjct 4217856 GTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATGC 4217820
>seq3289
Length=20206255
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855
|||||| ||||||||||| || || || | || || || | || || || |||
Sbjct 14369585 CACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAG--AAAGGGTGCGACCATCT 14369642
Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915
|||| ||| || || | || ||||| | ||||||||||||||||| |||||||||||
Sbjct 14369643 TCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 14369702
Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975
| || || || || || ||| || || | | ||||| |||| ||||||||
Sbjct 14369703 TGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 14369762
Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||| ||||| || |||||
Sbjct 14369763 TTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794
>seq359
Length=456481
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | || |||||||| || | ||| ||||| || ||| ||| ||
Sbjct 66557 CACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGTCCATCTTC 66498
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||| || || ||| ||||||| | | ||||| |||||||| || || || ||||| |
Sbjct 66497 CAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTG 66438
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || ||||| ||| | | || ||| | || || || | || ||||| ||
Sbjct 66437 AATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGTAATGGTCTT 66378
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || || ||||| |||||||||||
Sbjct 66377 TCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | || || ||||| || | || || || | |||| ||| ||
Sbjct 66785 CACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTC 66726
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||| || || ||| ||||||| | | ||||| ||||||||||| || || ||||| |
Sbjct 66725 CAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 66666
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||||||| ||| || || | | || || || | || ||||| ||
Sbjct 66665 GATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTT 66606
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || || ||||| |||||||||||
Sbjct 66605 TCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | || || ||||| || | ||| || || | |||| ||| |||
Sbjct 66100 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 66041
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| || || ||| | ||||| | | ||||| |||||||| || || || ||||| |
Sbjct 66040 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 65981
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| ||| ||| || || | | || || || | |||||||| |||
Sbjct 65980 ATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTTT 65921
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || | |||||| || |||||||||||
Sbjct 65920 CCCGTCAAAGTTTTTACGAAGATCTGCAT 65892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448215382750800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |