Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq3721 109 1e-19 seq3293 109 1e-19 seq3279 109 1e-19 seq3088 91.5 3e-14 seq3208 86.0 1e-12 seq3231 80.6 5e-11 >seq3721 Length=14725 Score = 109 bits (120), Expect = 1e-19 Identities = 343/521 (66%), Gaps = 18/521 (3%) Strand=Plus/Minus Query 7201 TCTTTATCTATTACCACAAATCCATATTTAT---TCCAACATGCCGAGC-ATAAATCTCT 7256 |||||| ||| || ||||| ||||||||| |||||||| || | |||| || Sbjct 2611 TCTTTACTTATAACAACAAACTCATATTTATCTTTCCAACATTT---GCTACAAATTTCC 2555 Query 7257 GAA--TGAGTTGTATGGCATGTC-CGTATTGACATGATCATCATAAATATGCTTCAGATT 7313 || | || | | ||| || | |||| |||||||||| |||||||| || | ||| Sbjct 2554 AAAAATTTCTTAAAAGTCATATCGCCTATT-ACATGATCATTGTAAATATGTTTAATATT 2496 Query 7314 CATTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGG 7373 |||||||||||| || | | | || || | ||| || | || | || || || Sbjct 2495 CATTTCATCTTGTTTAAATATTATAATTAAATTAGTATTGTCGCGTATTAAATGTTTTGG 2436 Query 7374 TATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCA 7433 |||| ||||||||||||||| |||||||| || | || || ||||||||||| || Sbjct 2435 TATTTTTGTATAAGTTTGACATAGATAGAAAGAATCGATATGTTTATGTCGACCCATACA 2376 Query 7434 GAAAAAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGA 7493 ||| || || | || | || || ||||| ||||| ||||||||||| | || Sbjct 2375 AAAATAATCTCTAATTGTAGTTTGCTTATCACAGATTACATCATCAAATATCATTATTGA 2316 Query 7494 GTTAGGCTTAGCATCTTCAGGCTTGATTACAGCTTCATGTTCG-CTG--AATGTGAAGAA 7550 | || |||| | || || ||| | ||| | || | ||| || || || | Sbjct 2315 ATGTGGTCTAGCTTTATCTGG---ACTTAAAACTTTTTCTTTGTCTGAAAACGTAAACAG 2259 Query 7551 TCCAATACCATCAATCTGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAG 7610 || || | ||| |||||| || | || || | ||||| || ||||| | | Sbjct 2258 CTGTATTCCCTTAATTGGTTTAATCAATTTCATTAGATATTGATATTTGGGTTGATACAA 2199 Query 7611 AGACTTTGAGTAAAGATATATATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGA 7670 ||||| || |||| || ||||| | ||| | | || || ||| | | || | Sbjct 2198 TGACTTGGAATAAATGTAAATATTTTGAAATTTAAGTCCATTGGGACTTTCTATTAAGCT 2139 Query 7671 CAGCAGAGCATTCGTCTTTCCACAGTTTGATGG-CCCGCAA 7710 | || | |||| ||||||||||| || ||||| ||| ||| Sbjct 2138 TATCATAACATTAGTCTTTCCACAATTAGATGGTCCCACAA 2098 >seq3293 Length=817856 Score = 109 bits (120), Expect = 1e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||| | |||||| || ||| ||| | || || |||| ||| | | | || Sbjct 310349 ACATGATCTTGATAAATGTGGATCATATTAAGTTGATTTTGATTGAATATTATTATTAAA 310290 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||||||| | | || ||||| ||||| |||||||| |||||| | | ||| || Sbjct 310289 TTGGCATTATCGCGCACAAGATGCTTTGGTATGCGTGTATACGTTTGAAATAAATAAAAT 310230 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||| | | || |||||||||||||| || | | || | ||| ||||||||| Sbjct 310229 GAGTCGATGTTTTTATGTCGACCCATGCAAAAGTATGAACGTATATAATCTTGTTTTTCA 310170 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGG 7514 || || ||||| ||||||||||| | || || |||||| | ||||| Sbjct 310169 CATGCTACATCATCAAATATCATTACCAAGCTATCCTTAGCTTTCTCAGG 310120 >seq3279 Length=2014198 Score = 109 bits (120), Expect = 1e-19 Identities = 343/521 (66%), Gaps = 18/521 (3%) Strand=Plus/Plus Query 7201 TCTTTATCTATTACCACAAATCCATATTTAT---TCCAACATGCCGAGC-ATAAATCTCT 7256 |||||| ||| || ||||| ||||||||| |||||||| || | |||| || Sbjct 1044886 TCTTTACTTATAACAACAAACTCATATTTATCTTTCCAACATTT---GCTACAAATTTCC 1044942 Query 7257 G--AATGAGTTGTATGGCATGTC-CGTATTGACATGATCATCATAAATATGCTTCAGATT 7313 ||| || | | ||| || | |||| |||||||||| |||||||| || | ||| Sbjct 1044943 AGAAATTTCTTAAAAGTCATATCGCCTATT-ACATGATCATTGTAAATATGTTTAATATT 1045001 Query 7314 CATTTCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGG 7373 |||||||||||| || | | | || || | ||| || | || | || || || Sbjct 1045002 CATTTCATCTTGTTTAAATATTATAATTAAATTAGTATTGTCGCGTATTAAATGTTTTGG 1045061 Query 7374 TATTCGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCA 7433 |||| ||||||||||||||| |||||||| || | || || ||||||||||| || Sbjct 1045062 TATTTTTGTATAAGTTTGACATAGATAGAAAGAATCGATATGTTTATGTCGACCCATACA 1045121 Query 7434 GAAAAAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGA 7493 ||| || || | || | || || ||||| ||||| ||||||||||| | || Sbjct 1045122 AAAATAATCTCTAATTGTAGTTTGCTTATCACAGATTACATCATCAAATATCATTATTGA 1045181 Query 7494 GTTAGGCTTAGCATCTTCAGGCTTGATTACAGCTTCATGTTCG-CTG--AATGTGAAGAA 7550 | || |||| | || || ||| | ||| | || | ||| || || || | Sbjct 1045182 ATGTGGTCTAGCTTTATCTGG---ACTTAAAACTTTTTCTTTGTCTGAAAACGTAAACAG 1045238 Query 7551 TCCAATACCATCAATCTGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAG 7610 || || | ||| |||||| || | || || | ||||| || ||||| | | Sbjct 1045239 CTGTATTCCCTTAATTGGTTTAATCAATTTCATTAGATATTGATATTTGGGTTGATACAA 1045298 Query 7611 AGACTTTGAGTAAAGATATATATTCTCAAACCTCAAACCGTTTGGATGTACAATAAGAGA 7670 ||||| || |||| || ||||| | ||| | | || || ||| | | || | Sbjct 1045299 TGACTTGGAATAAATGTAAATATTTTGAAATTTAAGTCCATTGGGACTTTCTATTAAGCT 1045358 Query 7671 CAGCAGAGCATTCGTCTTTCCACAGTTTGATGG-CCCGCAA 7710 | || | |||| ||||||||||| || ||||| ||| ||| Sbjct 1045359 TATCATAACATTAGTCTTTCCACAATTAGATGGTCCCACAA 1045399 Score = 105 bits (116), Expect = 1e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 || ||||| | ||| || ||||||| ||| | || |||||| ||||| | | || Sbjct 1816582 ACGTGATCTTGATATATGTGCTTCATATTAAGTTGGTCTTGATTGAACATTATTATTAAA 1816523 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||||||| | | || ||||| ||||| |||||||| |||| || | ||| || Sbjct 1816522 TTGGCATTATCGCGCACAAGATGCTTTGGTATGCGTGTATACATTTGGCATAAATAAAAT 1816463 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||||| | || ||||| |||||||| || || | || | ||| ||||||||| Sbjct 1816462 GAGTCAATGTTTTTATGTCGTCCCATGCAAAAGAATGAACGTATATTATCTTGTTTTTCA 1816403 Query 7465 CAAGCAACATCGTCAAATATCAT 7487 || || ||||| ||||||| ||| Sbjct 1816402 CATGCTACATCATCAAATAGCAT 1816380 Score = 105 bits (116), Expect = 1e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 || ||||| | ||| || ||||||| ||| | || |||||| ||||| | | || Sbjct 1825065 ACGTGATCTTGATATATGTGCTTCATATTAAGTTGGTCTTGATTGAACATTATTATTAAA 1825006 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||||||| | | || ||||| ||||| |||||||| |||| || | ||| || Sbjct 1825005 TTGGCATTATCGCGCACAAGATGCTTTGGTATGCGTGTATACATTTGGCATAAATAAAAT 1824946 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||||| | || ||||| |||||||| || || | || | ||| ||||||||| Sbjct 1824945 GAGTCAATGTTTTTATGTCGTCCCATGCAAAAGAATGAACGTATATTATCTTGTTTTTCA 1824886 Query 7465 CAAGCAACATCGTCAAATATCAT 7487 || || ||||| ||||||| ||| Sbjct 1824885 CATGCTACATCATCAAATAGCAT 1824863 Score = 89.7 bits (98), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 || ||||| | ||| || ||||||| ||| | || |||||| ||||| | | || Sbjct 1810425 ACGTGATCTTGATATATGTGCTTCATATTAAGTTGGTCTTGATTGAACATTATTATTAAA 1810366 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||| | | | || ||||| ||||| |||||||| |||| || | ||| || Sbjct 1810365 TTGGCAT---CGCGCACAAGATGCTTTGGTATGCGTGTATACATTTGGCATAAATAAAAT 1810309 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||||| | || ||||| |||||||| || || | || | ||| ||||||||| Sbjct 1810308 GAGTCAATGTTTTTATGTCGTCCCATGCAAAAGAATGAACGTATATTATCTTGTTTTTCA 1810249 Query 7465 CAAGCAACATCGTCAAATATCAT 7487 || || ||||| ||||||| ||| Sbjct 1810248 CATGCTACATCATCAAATAGCAT 1810226 >seq3088 Length=188321 Score = 91.5 bits (100), Expect = 3e-14 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||| | |||||| |||| | ||| | || |||||| ||| | | | || Sbjct 79992 ACATGATCTTGATAAATGTGCTCTATATTAAGTTGGTCTTGATTGAATATTATTATTAAA 79933 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || || |||| | || || || ||||| |||||||| |||||||| | ||| || Sbjct 79932 TTGACAATATCGCGCCCAAGATGTTTTGGTATGCGTGTATACGTTTGACATAAATAAAAT 79873 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||| | | || ||||||||||| || | | | || | || ||||||||| Sbjct 79872 GAGTCGATGTTTTTATGTCGACCCATACAAGAGTATGAACATATATTATATTGTTTTTCA 79813 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGG 7514 || || ||||| ||||||||||| | ||| || ||||||| | ||||| Sbjct 79812 CATGCTACATCATCAAATATCATTATCGAGCTATGCTTAGCTTTCTCAGG 79763 Score = 86.0 bits (94), Expect = 1e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||| | |||||| |||| | ||| | || |||||| ||| | | | || Sbjct 989 ACATGATCTTGATAAATGTGCTCTATATTAAGTTGGTCTTGATTGAATATTATTATTAAA 930 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || || ||| | | || || || ||||| |||||||| |||||||| | ||| || Sbjct 929 TTGACAACATCGCGCACAAGATGTTTTGGTATGCGTGTATACGTTTGACATAAATAAAAT 870 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||| | | || ||||||||||| || | | | || | || ||||||||| Sbjct 869 GAGTCGATGTTTTTATGTCGACCCATACAAGAGTATGAACATATATTATATTGTTTTTCA 810 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAG 7504 || || ||||| ||||||||||| | ||| || |||||| Sbjct 809 CATGCTACATCATCAAATATCATTATCGAGCTATGCTTAG 770 >seq3208 Length=72834 Score = 86.0 bits (94), Expect = 1e-12 Identities = 247/377 (66%), Gaps = 5/377 (1%) Strand=Plus/Plus Query 7282 TTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGA 7341 || |||||||| | |||||| | |||| || | || ||||||| ||| | | | Sbjct 43572 TTCACATGATCTTGATAAATGTTTTTCATATAAAGTTGATCTTGATTGAATATTATTATT 43631 Query 7342 AAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAG 7401 || || ||||| || | | || ||||| ||||| |||||||| |||||| | | ||| Sbjct 43632 AAATTGGCATTTTCGCGCACAAGATGCTTTGGTATGCGTGTATACGTTTGA-ATAAATAA 43690 Query 7402 AAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTT 7461 || ||| | | || |||||||||| || || | | || | ||| ||| || Sbjct 43691 AATGAGTCGATGTTTTTATGTCGACCCACACAAAAGTATGAACGTATATTATCTTGTGTT 43750 Query 7462 TCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATT 7521 | ||| || ||||| ||||||||||| | || || |||||| | ||||| || Sbjct 43751 TTACATGCTACATCATCAAATATCATTATCGAACTATCCTTAGCTTTCTCAGGTGGTATA 43810 Query 7522 ACAGCTTCATGTTCGCTG--AATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTG 7579 ||| |||| |||| | || ||||| |||| || || | || | | | || Sbjct 43811 ACACCTTC--GTTCTTAGAAAACGTGAAATATCCCATTCCTTTTATTGGGGTCACTAGAT 43868 Query 7580 TCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAA 7639 | | ||| | | ||| || ||||| | || |||||||||| || ||||| | || Sbjct 43869 TTTTTAGGTATTCATATTTCGGTTGAAATAATGATTTTGAGTAAAAGTAAATATTTTTAA 43928 Query 7640 ACCTCAAACCGTTTGGA 7656 | | || || ||| || Sbjct 43929 ATTTTAATCCATTTTGA 43945 >seq3231 Length=91178 Score = 80.6 bits (88), Expect = 5e-11 Identities = 151/221 (68%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||| | || ||| || |||| ||| | || |||||| ||| | | | || Sbjct 1509 ACATGATCTTGATCAATGTGTTTCATATTAAGTTGTTCTTGATTGAATATTATTATTAAA 1568 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||||||| | | || ||||| ||||| || ||||| |||||||| | ||| || Sbjct 1569 TTGGCATTATCGCACACAAGATGCTTTGGTATGCGGGTATACGTTTGACATAAATAAAAT 1628 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||| | | || ||||| ||||| || || | | || | ||| ||| |||| Sbjct 1629 GAGTCCATGTTTTTATGTCG-CCCATACAAAAGTATGAACGTATATTATCTTGTGGTTCA 1687 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGC 7505 || || ||| ||||||||||| | ||| || |||||| Sbjct 1688 CATGCTGCATTATCAAATATCATTATCGAGCTATCCTTAGC 1728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97958658575620