Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq466 571 7e-158
seq3134 289 4e-73
>seq466
Length=100518
Score = 571 bits (632), Expect = 7e-158
Identities = 1244/1852 (67%), Gaps = 34/1852 (2%)
Strand=Plus/Minus
Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075
|| ||||| || || ||||| ||||| || ||||| || || |||| |||||
Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003
Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135
|| || |||| ||| ||| | || || || | ||| ||||| | ||||||||||
Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943
Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195
||||| || || || || || || || |||||||| || | | |||| | || |||
Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883
Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGA 62251
|| | ||||| || || || | | | ||||| || | | || | |||| || || ||
Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGA 42824
Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311
||| | ||| ||||| ||| || |||||||||| ||| || | ||| |||||
Sbjct 42823 TCCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAA 42764
Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371
| | | | | ||| ||||| || |||||||| || || |||||||||| | || ||
Sbjct 42763 ATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATA 42704
Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431
||| || || || || || | ||||||||| || |||| ||||| ||||| |||||
Sbjct 42703 AATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGC 42644
Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT---- 62487
|| ||||| || || | | ||| ||||||| ||||| ||| ||||||
Sbjct 42643 TGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGAC 42589
Query 62488 CTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 62546
|||||| || | ||||| | ||||||||| | ||| |||
Sbjct 42588 CTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGT 42529
Query 62547 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 62605
| || || || || | | || ||| | ||| || || || || || ||||||| |
Sbjct 42528 AAAACTCCCTTGCTTACTGGACT-TCCAATATAGGTTTCATACGGGCCATCCTTCTTGGA 42470
Query 62606 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 62665
| ||||||||| || || || || || || ||||| ||||| ||||| | | ||| |
Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410
Query 62666 ATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCC 62725
| |||||| ||| ||| | ||| | | | ||||| || || || || || ||
Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350
Query 62726 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62785
||| ||||||||||| ||||| | || | ||| || ||| || ||||| | ||
Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290
Query 62786 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62845
|||||| || ||||| || |||||||| || ||| || || | ||| ||||| ||
Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230
Query 62846 CAGTTTGAGAAAATCAAA-------TCGCCCATCTATTACAAACATGTTCAAGGCAACAG 62898
|||||| || || | ||| || || ||||||||||| | ||| | |
Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTC----ACAAACATGTTTAGGGCTATTG 42174
Query 62899 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 62958
|||| | |||||| || |||| || | | | | ||| | | || || ||||| |
Sbjct 42173 ATGCTAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATA 42114
Query 62959 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63018
|||||| ||||| |||||||| | |||||||||||| || ||| ||||||||| || |
Sbjct 42113 AATTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTT 42054
Query 63019 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63078
|| |||| ||| | || |||||||| || | |||||||| || || || ||| |
Sbjct 42053 TAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAG 41994
Query 63079 CTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTT 63138
| ||||||| | || || | || || ||| |||| ||| ||||||| ||
Sbjct 41993 ATTGAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTT 41934
Query 63139 CGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 63198
| || || || |||||||||| | || || || |||| | ||||||||||||||||
Sbjct 41933 CAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACC 41874
Query 63199 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63258
| || ||| | | || || ||||||||||||||||||||||| | || |||||
Sbjct 41873 AATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATA 41814
Query 63259 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63318
|||| | | | ||||||||| ||||| ||||| |||||||| || | || | | |
Sbjct 41813 GATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACA 41754
Query 63319 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63378
|| |||||||| || |||| ||| || || | |||| || | ||| || ||||
Sbjct 41753 CGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCT 41694
Query 63379 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63438
|||| | || | || || ||| | ||||| | |||||| | | || |||||
Sbjct 41693 GATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAG 41634
Query 63439 TACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 63498
||||||| || ||||| ||| || | || | || |||||| | || ||||| |
Sbjct 41633 TACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAA 41574
Query 63499 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTA 63558
| || |||||| ||| ||||| | |||||| | | || || | | | || || || |
Sbjct 41573 TGCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAA 41514
Query 63559 TGCTATCATCGAT--CA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63615
| ||| |||| || |||||| |||||||| || | |||| |||| | ||
Sbjct 41513 TAGAATC--CGATGCCATTGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGG 41457
Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63675
| ||| ||| | || || || || || ||||| | ||| || |||| ||| || |
Sbjct 41456 CAGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATG 41397
Query 63676 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735
| ||||| || || || ||||| ||| || || | |||||||||||||| |||||
Sbjct 41396 TTTCAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGT 41337
Query 63736 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63795
|||| |||| ||| | || ||| || ||||| | ||| || ||| || | || |
Sbjct 41336 GCTGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCT 41277
Query 63796 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847
|||| ||||| || || ||| ||| || || || ||||| || | |||||
Sbjct 41276 TAAATCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225
>seq3134
Length=2474545
Score = 289 bits (320), Expect = 4e-73
Identities = 574/843 (68%), Gaps = 19/843 (2%)
Strand=Plus/Minus
Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063
|| |||||| || ||||| ||||| ||| || || ||||| ||||| || |||||
Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142
Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123
|| || |||||||||| ||||||||| | || || | ||| | || | |
Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082
Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183
||| | || | ||| || || || || |||||| ||| | | | ||||||||
Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022
Query 33184 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 33243
|| || | || || || || || |||||||||| || |||||||||| || |||||
Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962
Query 33244 GTTATAATAGATCTAA------CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 33297
| || ||||| | || | ||| || || | |||| ||||| | |||
Sbjct 573961 GAGAT----GATCTCAATGATGCGCTCTCTGCAG--GGACGCTGCACCAAATGCTGGAAC 573908
Query 33298 ATCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 33356
|||| ||| || || ||||| ||||| |||||||| | || |||||||| || ||
Sbjct 573907 ATCAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAA 573849
Query 33357 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGA 33416
||||| |||||||| ||||||||||| || |||||||| || ||||| || ||
Sbjct 573848 AGTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCT 573789
Query 33417 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCT 33473
||||||||| || || || |||||||| || || | | ||| ||| | | | || ||
Sbjct 573788 AAAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC-CT 573730
Query 33474 GTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532
| | |||||| | ||||| ||||||||| || || ||||| ||||| |
Sbjct 573729 TAGAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAA 573670
Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592
| |||||||| ||||| | | || ||| | ||| || || |||| | |
Sbjct 573669 TTGCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGC 573610
Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652
| ||||||||||| || | || || ||||| |||||||| || ||||| || | |||||
Sbjct 573609 TGTACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCT 573550
Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712
| |||||||| ||||| | ||| || || ||| ||| || || || || || ||
Sbjct 573549 CTGTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGG 573490
Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33772
||| |||||||| |||| |||||| || |||| |||| ||||||
Sbjct 573489 AGGCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTG 573430
Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832
||| ||| | | ||| ||||| | ||| ||||| ||||| ||||| ||||||||||| |
Sbjct 573429 CCCAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGG 573370
Query 33833 CCT 33835
|||
Sbjct 573369 CCT 573367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622841844054800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |