Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq466 178 1e-39
seq3134 134 1e-26
seq3289 86.0 6e-12
>seq466
Length=100518
Score = 178 bits (196), Expect = 1e-39
Identities = 923/1442 (64%), Gaps = 67/1442 (5%)
Strand=Plus/Minus
Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173
|| || ||||| || | ||||| || ||||| || | | ||| |||||||| |||||
Sbjct 43086 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTA 43027
Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTATAGGTTGGATTGGCC 147233
| ||| || ||| ||||| ||| || |||| ||| | |||| |||| | ||
Sbjct 43026 AGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCA 42967
Query 147234 ACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTCC 147293
||| || ||| | ||||| || ||||| || | | || | || || ||||| |
Sbjct 42966 ACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGCCATTTT- 42908
Query 147294 AACACT--ACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTG 147351
|| | | ||||| || | ||||| |||| ||| | | || ||| | | |
Sbjct 42907 AATAGTTGACTTTACCGATA-TCTCCCATACGGTTTTGTACAAATCCCGGATTTCTTCGG 42849
Query 147352 GAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATTT---TTATCATGATAT 147408
| || || |||||||||| |||||| | || ||||||| || |||| ||
Sbjct 42848 GTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCTCAT 42789
Query 147409 CTGTCGAATATACGTTGGTGTCTACGAGTTTATCGACG----AGATGCTGATTGACCACT 147464
| || | | | | || || | ||| ||| | ||| |||| || |||
Sbjct 42788 CA-TCCCACAAATCAAG----CTCCGT-TAAATC-ACGCAATAAATGAGGATTTACAACT 42736
Query 147465 TGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACT--AGTAAACGGCTCGAACG 147522
||| |||| || |||| |||| || | ||| |||| | ||| | ||||||||||
Sbjct 42735 TGAAACTCACCGGACAATACTCGTCTT--GTATAAATGTTTGAAGTGTAGGGCTCGAACG 42678
Query 147523 ACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATG 147582
|||| ||||| || | || || ||||| | ||| || |||||| |||||| | || |
Sbjct 42677 ACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAG 42618
Query 147583 AATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCAT 147642
| || | | |||||| || | ||||| | ||||||| |||||||||
Sbjct 42617 AGTTTCTAACACCGTGCTGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAAAGATCTG 42558
Query 147643 TCGATTGGTTAA-TATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCA 147701
| |||| | | ||||||| |||| ||||||||| ||| ||| | || ||||||
Sbjct 42557 T----TGGTGATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCA 42502
Query 147702 TCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTT--AGTGCAC 147759
|| | || || | || | | || | | ||| ||| ||| | || |
Sbjct 42501 ATATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAG--CTTCCAAAGCTC 42444
Query 147760 CATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTGGCTGTCGTAGG 147819
|||| ||||||||||| | || | || ||| ||| || |||| ||| || || |
Sbjct 42443 CATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACG 42384
Query 147820 GCATA-TC--CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTC 147876
| | || || ||| || | ||| |||| ||||| | ||| ||||| || || |
Sbjct 42383 GAAACCTCATCAGAATT---AATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGC 42327
Query 147877 GGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTT 147936
|||| | ||||| ||| || || | ||| |||||| | || | || || ||||
Sbjct 42326 GGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTT 42267
Query 147937 TATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAGTCG-AAGCTT 147995
|||| || || |||||||| | | ||| ||||| | || || |||||| ||| ||
Sbjct 42266 TATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGATT 42207
Query 147996 TTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCGTT 148055
|| | | |||| | |||| ||| || || || || ||||| || || ||
Sbjct 42206 TTTCGGCCGTCA----CAAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATT 42151
Query 148056 TCTCGATTGTCGCT--ATATTGAACGATTTCGGCACACAGATTGCTG---TTTCGAATCA 148110
|| | || |||| ||| | ||| ||||| | || | ||| ||| ||| | |
Sbjct 42150 TC--GTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTTATAGT-- 42095
Query 148111 CTCCCTCGtttttttGATTATTTTTATTGTTA-ACGTGATCTTTAAACATCATGTATGGA 148169
||| | |||| |||||| |||| ||||| ||| | |||||||| | |||||| ||
Sbjct 42094 -TCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAG-TCTTTAAAAAGCATGTAAGGG 42037
Query 148170 GCTCCGGTCTCGACTTGAGTCTCAATAATTTTTCTATGAAGATCTAAAGCCGAAA---TT 148226
| || ||||| ||||||| ||||| || |||| | |||| || ||
Sbjct 42036 GTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTGAGCCTTAACAATT 41977
Query 148227 TGTTTTTTAAACTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCA 148286
| || | | || || || || || | || | | || ||||||| ||
Sbjct 41976 CGATTCTGTCGC---CCCTCTTTTTCATATTTGACATACAATTTTTCAAATTCTTCACCC 41920
Query 148287 TAGCAATCGTTTAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCT-GT 148345
| ||| | | |||||| || | || || |||||||| ||||| | |||| | |
Sbjct 41919 CAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAAT--CCTCGTTGG 41862
Query 148346 CTTTA-CCCTCTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCT 148404
||| | ||| ||||||||| |||||||| |||||| |||| ||| ||||| ||||||
Sbjct 41861 CTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCC 41802
Query 148405 TCATATCCTCGGCACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCC 148464
||||| || |||| || || || ||||| ||| ||||||| ||||
Sbjct 41801 GATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCC 41742
Query 148465 AAGGCTCGATGTATACGGTCATGGCGCCTTTCCTTTT---ACCTCCTTGATCGACATGGC 148521
||||||| | ||| | | | || ||| ||||| ||| || |||||||||| ||
Sbjct 41741 AAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCGACATAGC 41682
Query 148522 GT 148523
||
Sbjct 41681 GT 41680
>seq3134
Length=2474545
Score = 134 bits (148), Expect = 1e-26
Identities = 202/287 (70%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737
|| || || ||||| | || |||| ||||| || ||||| ||||| || ||||
Sbjct 1232376 GACGACCTGTGGAACTCGGCACAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTT 1232317
Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797
|| ||||||||||||||||||||||| | |||||||| |||| || |||| ||| |
Sbjct 1232316 CTGCGCATGTACTGGGCCAAAAAGATATTGGAGTGGACGGAAACGCCAGAGCTGGCATTG 1232257
Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857
|| || || || ||||| | ||||| || ||||| |||||||| || || |||
Sbjct 1232256 GAATACAGCATACTGCTGAACGACAAGTACAGCCTGGACGGACGCGATCCCAATGGCTAT 1232197
Query 71858 GTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGTG 71917
|| || ||||||||| ||| ||||| ||||||| | ||| || || | |
Sbjct 1232196 GTGGGCTGCATGTGGTCCATAGGCGGTGTTCACGACCAAGGCTGGAAGGAGCGCGACATC 1232137
Query 71918 TTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTT 71964
||||| || || ||||| ||||| | | || || | ||||||||
Sbjct 1232136 TTTGGCAAGATACGCTACATGAACTATCAGGGCTGTAAGCGCAAGTT 1232090
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 119640 CGCTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTA 119699
|||| || |||||||| ||| ||||| ||||| || ||||| || | || || |
Sbjct 574192 CGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATT 574133
Query 119700 TTCATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAA- 119758
| ||| || || ||||| |||||| | | ||| || | ||||| | ||| |
Sbjct 574132 TCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCG-ACCCCAAGTTCAACCAG 574074
Query 119759 CAGTCGATCTGCCACAAACTCGATGTATTCGCACATGGATTGCG-AATTCATGCCCAACA 119817
||| ||||| ||||||||||| || |||||| |||| | |||| |||||||||| | ||
Sbjct 574073 CAGACGATCGGCCACAAACTCAATATATTCGGACAT-AAGTGCGCAATTCATGCCGATCA 574015
Query 119818 TAGCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATG 119858
| |||||| | || | |||| || |||| |||||||
Sbjct 574014 AATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATG 573974
>seq3289
Length=20206255
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||||||||| | || || || | ||||| | || | ||| |
Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| ||||||||| | || ||| ||||| ||||||||||| || ||||| |||||
Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14369675
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | | |||| || ||||| || | ||||||| | | | | | ||||| ||
Sbjct 14369674 CAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAAT 14369615
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || ||||| |||||| | ||| |||| ||
Sbjct 14369614 ATCCAGAAAGAGTCTACTTTGCATTTGGTGCT 14369583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478581446221600
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