Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq466 178 1e-39 seq3134 134 1e-26 seq3289 86.0 6e-12 >seq466 Length=100518 Score = 178 bits (196), Expect = 1e-39 Identities = 923/1442 (64%), Gaps = 67/1442 (5%) Strand=Plus/Minus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 || || ||||| || | ||||| || ||||| || | | ||| |||||||| ||||| Sbjct 43086 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTA 43027 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTATAGGTTGGATTGGCC 147233 | ||| || ||| ||||| ||| || |||| ||| | |||| |||| | || Sbjct 43026 AGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCA 42967 Query 147234 ACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTCC 147293 ||| || ||| | ||||| || ||||| || | | || | || || ||||| | Sbjct 42966 ACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGCCATTTT- 42908 Query 147294 AACACT--ACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTG 147351 || | | ||||| || | ||||| |||| ||| | | || ||| | | | Sbjct 42907 AATAGTTGACTTTACCGATA-TCTCCCATACGGTTTTGTACAAATCCCGGATTTCTTCGG 42849 Query 147352 GAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATTT---TTATCATGATAT 147408 | || || |||||||||| |||||| | || ||||||| || |||| || Sbjct 42848 GTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCTCAT 42789 Query 147409 CTGTCGAATATACGTTGGTGTCTACGAGTTTATCGACG----AGATGCTGATTGACCACT 147464 | || | | | | || || | ||| ||| | ||| |||| || ||| Sbjct 42788 CA-TCCCACAAATCAAG----CTCCGT-TAAATC-ACGCAATAAATGAGGATTTACAACT 42736 Query 147465 TGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACT--AGTAAACGGCTCGAACG 147522 ||| |||| || |||| |||| || | ||| |||| | ||| | |||||||||| Sbjct 42735 TGAAACTCACCGGACAATACTCGTCTT--GTATAAATGTTTGAAGTGTAGGGCTCGAACG 42678 Query 147523 ACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATG 147582 |||| ||||| || | || || ||||| | ||| || |||||| |||||| | || | Sbjct 42677 ACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAG 42618 Query 147583 AATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCAT 147642 | || | | |||||| || | ||||| | ||||||| ||||||||| Sbjct 42617 AGTTTCTAACACCGTGCTGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAAAGATCTG 42558 Query 147643 TCGATTGGTTAA-TATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCA 147701 | |||| | | ||||||| |||| ||||||||| ||| ||| | || |||||| Sbjct 42557 T----TGGTGATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCA 42502 Query 147702 TCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTT--AGTGCAC 147759 || | || || | || | | || | | ||| ||| ||| | || | Sbjct 42501 ATATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAG--CTTCCAAAGCTC 42444 Query 147760 CATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTGGCTGTCGTAGG 147819 |||| ||||||||||| | || | || ||| ||| || |||| ||| || || | Sbjct 42443 CATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACG 42384 Query 147820 GCATA-TC--CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTC 147876 | | || || ||| || | ||| |||| ||||| | ||| ||||| || || | Sbjct 42383 GAAACCTCATCAGAATT---AATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGC 42327 Query 147877 GGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTT 147936 |||| | ||||| ||| || || | ||| |||||| | || | || || |||| Sbjct 42326 GGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTT 42267 Query 147937 TATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAGTCG-AAGCTT 147995 |||| || || |||||||| | | ||| ||||| | || || |||||| ||| || Sbjct 42266 TATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGATT 42207 Query 147996 TTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCGTT 148055 || | | |||| | |||| ||| || || || || ||||| || || || Sbjct 42206 TTTCGGCCGTCA----CAAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATT 42151 Query 148056 TCTCGATTGTCGCT--ATATTGAACGATTTCGGCACACAGATTGCTG---TTTCGAATCA 148110 || | || |||| ||| | ||| ||||| | || | ||| ||| ||| | | Sbjct 42150 TC--GTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTTATAGT-- 42095 Query 148111 CTCCCTCGtttttttGATTATTTTTATTGTTA-ACGTGATCTTTAAACATCATGTATGGA 148169 ||| | |||| |||||| |||| ||||| ||| | |||||||| | |||||| || Sbjct 42094 -TCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAG-TCTTTAAAAAGCATGTAAGGG 42037 Query 148170 GCTCCGGTCTCGACTTGAGTCTCAATAATTTTTCTATGAAGATCTAAAGCCGAAA---TT 148226 | || ||||| ||||||| ||||| || |||| | |||| || || Sbjct 42036 GTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTGAGCCTTAACAATT 41977 Query 148227 TGTTTTTTAAACTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCA 148286 | || | | || || || || || | || | | || ||||||| || Sbjct 41976 CGATTCTGTCGC---CCCTCTTTTTCATATTTGACATACAATTTTTCAAATTCTTCACCC 41920 Query 148287 TAGCAATCGTTTAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCT-GT 148345 | ||| | | |||||| || | || || |||||||| ||||| | |||| | | Sbjct 41919 CAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAAT--CCTCGTTGG 41862 Query 148346 CTTTA-CCCTCTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCT 148404 ||| | ||| ||||||||| |||||||| |||||| |||| ||| ||||| |||||| Sbjct 41861 CTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCC 41802 Query 148405 TCATATCCTCGGCACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCC 148464 ||||| || |||| || || || ||||| ||| ||||||| |||| Sbjct 41801 GATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCC 41742 Query 148465 AAGGCTCGATGTATACGGTCATGGCGCCTTTCCTTTT---ACCTCCTTGATCGACATGGC 148521 ||||||| | ||| | | | || ||| ||||| ||| || |||||||||| || Sbjct 41741 AAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCGACATAGC 41682 Query 148522 GT 148523 || Sbjct 41681 GT 41680 >seq3134 Length=2474545 Score = 134 bits (148), Expect = 1e-26 Identities = 202/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 || || || ||||| | || |||| ||||| || ||||| ||||| || |||| Sbjct 1232376 GACGACCTGTGGAACTCGGCACAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTT 1232317 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797 || ||||||||||||||||||||||| | |||||||| |||| || |||| ||| | Sbjct 1232316 CTGCGCATGTACTGGGCCAAAAAGATATTGGAGTGGACGGAAACGCCAGAGCTGGCATTG 1232257 Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857 || || || || ||||| | ||||| || ||||| |||||||| || || ||| Sbjct 1232256 GAATACAGCATACTGCTGAACGACAAGTACAGCCTGGACGGACGCGATCCCAATGGCTAT 1232197 Query 71858 GTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGTG 71917 || || ||||||||| ||| ||||| ||||||| | ||| || || | | Sbjct 1232196 GTGGGCTGCATGTGGTCCATAGGCGGTGTTCACGACCAAGGCTGGAAGGAGCGCGACATC 1232137 Query 71918 TTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTT 71964 ||||| || || ||||| ||||| | | || || | |||||||| Sbjct 1232136 TTTGGCAAGATACGCTACATGAACTATCAGGGCTGTAAGCGCAAGTT 1232090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 119640 CGCTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTA 119699 |||| || |||||||| ||| ||||| ||||| || ||||| || | || || | Sbjct 574192 CGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATT 574133 Query 119700 TTCATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAA- 119758 | ||| || || ||||| |||||| | | ||| || | ||||| | ||| | Sbjct 574132 TCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCG-ACCCCAAGTTCAACCAG 574074 Query 119759 CAGTCGATCTGCCACAAACTCGATGTATTCGCACATGGATTGCG-AATTCATGCCCAACA 119817 ||| ||||| ||||||||||| || |||||| |||| | |||| |||||||||| | || Sbjct 574073 CAGACGATCGGCCACAAACTCAATATATTCGGACAT-AAGTGCGCAATTCATGCCGATCA 574015 Query 119818 TAGCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATG 119858 | |||||| | || | |||| || |||| ||||||| Sbjct 574014 AATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATG 573974 >seq3289 Length=20206255 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | || || || | ||||| | || | ||| | Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||||||| | || ||| ||||| ||||||||||| || ||||| ||||| Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14369675 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || ||||| || | ||||||| | | | | | ||||| || Sbjct 14369674 CAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAAT 14369615 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| |||||| | ||| |||| || Sbjct 14369614 ATCCAGAAAGAGTCTACTTTGCATTTGGTGCT 14369583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478581446221600