Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq466 210 6e-49 >seq466 Length=100518 Score = 210 bits (232), Expect = 6e-49 Identities = 578/882 (66%), Gaps = 8/882 (1%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 || ||||| | || | ||||| || ||||| ||| |||||||||| || |||||||| Sbjct 41306 ATTAATGGCAAAATAGCGGAACGACCACAGCACATGCTAATGCGTGTCGCAATTGGTATA 41365 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| | ||| ||||| | ||||||||||||||||| | ||| | ||| || Sbjct 41366 CATGGTGATGATATTGATTCTGCGATTGAAACATATAATTTACTATCGGAACGTTATTTT 41425 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || || || | ||||| | | ||||| || ||| || | || || || Sbjct 41426 ACACATGCATCACCAACGCTTTTTGCTGCTGCCACAAACCGTCCCCAATTATCATCATGT 41485 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 |||||| ||| |||| ||||| || || || || ||| | ||| | || | || Sbjct 41486 TTTCTTTTAACAATGGCATCGGATTCTATTGAAGGAATATTTAAAACAGTAGAGCAGTGC 41545 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAG 363729 || | || ||||| ||||| || |||||| | | || | |||| ||| || Sbjct 41546 GCAATGATCTCCAAATCGGCAGGAGGCATTGGTCTTAATGTTCATTGTATTCGAGCAAAG 41605 Query 363730 AACAGTTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGT 363788 || | ||| ||||||| || |||| | ||||| |||| || |||||| | || Sbjct 41606 GGCACCTCTATTTCCGGCACAAATGG-TACTTCAAATGGCTTGGTACCAATGCTTAGAGT 41664 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 ||| ||||| || | || ||||| |||||||| || || | ||| || || || Sbjct 41665 ATTTAACAATGTGGCACGCTATGTCGATCAGGGTGGTGGTAAAAGACCAGGAGCATTCGC 41724 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 ||| || || |||||| ||| | || | ||||| ||| | || || ||||| || Sbjct 41725 TATTTACCTGGAGCCTTGGCATTCAGACGTGTTTGAATTTTTAGACCTTAAAAAAAATAC 41784 Query 363909 GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTT 363968 |||||||||||| || || || ||||| || ||||| | ||| || |||| | || Sbjct 41785 TGGAAAAGAGGAACATCGGGCTCGGGATCTATTTTATGCCTTGTGGATTCCTGATCTCTT 41844 Query 363969 TATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 ||||||||| || || || || ||||||| | | || |||||| |||| || || Sbjct 41845 TATGAAGCGGGTTGAAGCCAACGAGGATTGGTCGTTGATGTGTCCACACAAATGCCCCGG 41904 Query 364029 TCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGG- 364087 ||| ||||| |||||||| || | || | || | || |||||| |||| Sbjct 41905 TCTGCAAGATGTTTGGGGTGAAGAATTTGAAAAATTGTATGTCAAATATGAAAAAGAGGG 41964 Query 364088 --GAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145 || || ||| | || || || || ||||||||||| || || || || Sbjct 41965 GCGACAGAATCG---AATTGTTAAGGCTCAATCTCTTTGGTTTGCCATAATTGAATCTCA 42021 Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCA 364205 | ||||| || || || || ||| | | ||||| ||||| ||| | || ||| || Sbjct 42022 AGTGGAGACTGGTACCCCTTACATGCTTTTTAAAGACTCGTGTAACAGAAAAAGCAATCA 42081 Query 364206 GCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGC 364265 || | |||| || || || || || |||| || || ||| |||| || | || Sbjct 42082 ACAAAATGTTGGAACTATAAAGTGCAGTAATTTATGCACGGAAATTGTTGAGTATTCAGC 42141 Query 364266 TCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 || ||||| | || |||||||| | || || || || || Sbjct 42142 GCCAGACGAAATAGCTGTATGTAATTTAGCATCAATAGCCCT 42183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303127659580460