Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq466 141 8e-29
seq3603 100 2e-16
seq359 87.8 2e-12
seq3289 82.4 7e-11
>seq466
Length=100518
Score = 141 bits (156), Expect = 8e-29
Identities = 912/1436 (64%), Gaps = 65/1436 (5%)
Strand=Plus/Minus
Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923
|| || ||||| || | ||| ||||| || || || | | |||||||||||| || ||
Sbjct 43086 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTA 43027
Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983
| ||| | ||| |||||| ||| || || | ||| || ||| | || | ||
Sbjct 43026 AGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCA 42967
Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTC 132043
||| | ||| | |||||||| ||||| || | | || || || || ||||| ||
Sbjct 42966 ACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGCCATTTT- 42908
Query 132044 AACAAT--ACTTT-CTGCTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGT 132100
|| | | ||||| | | | || ||||| |||| ||| | | || || || |
Sbjct 42907 AATAGTTGACTTTACCGAT--ATCTCCCATACGGTTTTGTACAAATCCCGGATTTCTTCG 42850
Query 132101 GGAATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCAGTTCT 132160
|| || || ||||| |||| |||||| | || |||||||| | ||| ||
Sbjct 42849 GGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCTCA 42790
Query 132161 GTCGAGTACACGTTGCAGTCTACGAGTTTATCGACG----AGATGTTGATTTACTATTTG 132216
|| | ||| || || || | ||| ||| | ||| ||||||| | |||
Sbjct 42789 -TC-ATCCCACAAATCAAGCTCCGT-TAAATC-ACGCAATAAATGAGGATTTACAACTTG 42734
Query 132217 ATATTCACCCGATAAGACTCTTCGTACGTACAAATTACT--AGTAAACGGCTCGAACGAT 132274
| | ||||| || || |||| || | ||| |||| | ||| | |||||||||||
Sbjct 42733 AAACTCACCGGACAATACTCGTCTT--GTATAAATGTTTGAAGTGTAGGGCTCGAACGAC 42676
Query 132275 TCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAA 132334
|| ||||| |||| |||||| || || | ||| || |||||| ||||| | || ||
Sbjct 42675 TCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAG 42616
Query 132335 TTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATTC 132394
|| | | ||||| || || |||||| | ||||||| ||| ||||| |
Sbjct 42615 TTTCTAACACCGTGCTGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAAAGATCTGTT 42556
Query 132395 GATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTTA 132454
| | || | ||||||| |||| |||||||| || | ||| | ||| ||| ||
Sbjct 42555 GGT---GATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAATA 42499
Query 132455 TAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGACTCAGGGCACCATAA 132514
|| | || || | || | |||| | ||| || || || |||||
Sbjct 42498 TAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCATAG 42439
Query 132515 TAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAAA 132574
|||||||| || |||||| | |||||| ||||| || || || || || ||
Sbjct 42438 TAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAAAC 42379
Query 132575 TTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTA 132634
| | | | || ||||| |||| || || | || ||||| || || | ||
Sbjct 42378 CTCATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCCGT 42319
Query 132635 AAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGAGA 132694
||||| ||| || ||| | || |||||| ||||| | || ||||||||||| ||
Sbjct 42318 AAATTTGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTTTATTCAGG 42259
Query 132695 TTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGTCA-AAG-TTTTTAGTCC 132752
|| || || |||| | ||| || | | || || ||||| ||| ||||| | ||
Sbjct 42258 TTTTTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGATTTTTCGGCC 42199
Query 132753 TTTTGTTGGCA-AAACAA-TTGACGGCAATCGAGGCCAAATTGCATACGGCTGTCTCTTT 132810
| || ||||| || | ||| || || || ||||| ||||| ||| | || |
Sbjct 42198 GT-------CACAAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATTTCGTC 42146
Query 132811 ATTATCGCT--ATACTGTACGATTTCTGCACACAAATTACTG---TTTCGAATAACTCCC 132865
| |||| ||||| || ||||| | || ||||||||| ||| ||| |||
Sbjct 42145 --TGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTT---ATAGTTCCA 42091
Query 132866 AAGtttttttGATTGTTTTTCTCGTTTACGTTA-TCTTTATGCAACATGTACGGACCTCC 132924
| |||| ||||||| |||| || |||| | |||||| | |||||| || ||
Sbjct 42090 ACATTTTGTTGATTGCTTTT-TCTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGTACC 42032
Query 132925 GGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAACGCC---AAAATTTG-TT 132980
|| || || ||| ||| || || |||| | ||| | |||| | ||
Sbjct 42031 AGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTGAGCCTTAACAATTCGATT 41972
Query 132981 CTTTAAACTTGCCCTGAGTCTCGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAGC 133040
|| | | ||| | || || | | || ||| ||||||||||| || |
Sbjct 41971 CTGTCGCC----CCTCTTTTTCATATTTGACATACAATTTTTCAAATTCTTCACCCCAAA 41916
Query 133041 AGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTTTTCTCCTGCGCTC- 133099
|| | || |||||| || | || ||||||||||| ||||| | ||| | |||
Sbjct 41915 CATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATC--CTCGTTGGCTTC 41858
Query 133100 -ACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCAT 133158
|||| ||||| || | ||| |||||| |||| |||||| ||| ||||||
Sbjct 41857 AACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCCG--- 41801
Query 133159 ATCTTCCGCGC--CCA-TATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCA 133215
|| |||| | ||| ||||| ||| | ||| ||||| ||| | ||||| ||||||
Sbjct 41800 ATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCCA 41741
Query 133216 AGGCTCGATATATACGGCCAAAGCGCCTTTCCTTTT---ACCTCCCTGATCCACAT 133268
|||||| | || | || || || ||| ||||| ||| |||||||| ||||
Sbjct 41740 AGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCGACAT 41685
>seq3603
Length=2672878
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
||||||||| | ||||| ||||| | || || || | || ||| | || |||||| ||
Sbjct 316128 AAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 316187
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | ||||| || || ||||||||||| || || || |||
Sbjct 316188 TCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 316247
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | ||||| | | ||||||||| || || |||| | | | | | || ||
Sbjct 316248 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTAC 316307
Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||||||||| || || || | || || |||
Sbjct 316308 AACATTCAAAAGGAGTCGACTTTGCACTTGGTG 316340
>seq359
Length=456481
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||||||||| | || |||||||| || || ||||| | || ||| | || || ||| |
Sbjct 65888 CAAAATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTGGAGCC 65947
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
||| || |||||| | || || ||||| ||||| || || || ||||| ||
Sbjct 65948 TTCCGATACGATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGA 66007
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
|| ||| | ||||| | || |||||||||||| |||||||
Sbjct 66008 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATG 66048
>seq3289
Length=20206255
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||||||||| | || || || | || || | || ||||| |
Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| ||||||||| | || ||| ||||| ||||||||||| || ||||| |||||
Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14369675
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | | |||| || |||||||| | ||||||| | | | | || || ||
Sbjct 14369674 CAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAAT 14369615
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || ||||| ||||| | ||||| |||
Sbjct 14369614 ATCCAGAAAGAGTCTACTTTGCATTTGGTG 14369585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429865104897150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |