Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq466 141 8e-29 seq3603 100 2e-16 seq359 87.8 2e-12 seq3289 82.4 7e-11 >seq466 Length=100518 Score = 141 bits (156), Expect = 8e-29 Identities = 912/1436 (64%), Gaps = 65/1436 (5%) Strand=Plus/Minus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 || || ||||| || | ||| ||||| || || || | | |||||||||||| || || Sbjct 43086 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTA 43027 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983 | ||| | ||| |||||| ||| || || | ||| || ||| | || | || Sbjct 43026 AGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCA 42967 Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTC 132043 ||| | ||| | |||||||| ||||| || | | || || || || ||||| || Sbjct 42966 ACATGAATATTAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCTGCCATTTT- 42908 Query 132044 AACAAT--ACTTT-CTGCTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGT 132100 || | | ||||| | | | || ||||| |||| ||| | | || || || | Sbjct 42907 AATAGTTGACTTTACCGAT--ATCTCCCATACGGTTTTGTACAAATCCCGGATTTCTTCG 42850 Query 132101 GGAATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCAGTTCT 132160 || || || ||||| |||| |||||| | || |||||||| | ||| || Sbjct 42849 GGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCTCA 42790 Query 132161 GTCGAGTACACGTTGCAGTCTACGAGTTTATCGACG----AGATGTTGATTTACTATTTG 132216 || | ||| || || || | ||| ||| | ||| ||||||| | ||| Sbjct 42789 -TC-ATCCCACAAATCAAGCTCCGT-TAAATC-ACGCAATAAATGAGGATTTACAACTTG 42734 Query 132217 ATATTCACCCGATAAGACTCTTCGTACGTACAAATTACT--AGTAAACGGCTCGAACGAT 132274 | | ||||| || || |||| || | ||| |||| | ||| | ||||||||||| Sbjct 42733 AAACTCACCGGACAATACTCGTCTT--GTATAAATGTTTGAAGTGTAGGGCTCGAACGAC 42676 Query 132275 TCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAA 132334 || ||||| |||| |||||| || || | ||| || |||||| ||||| | || || Sbjct 42675 TCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAG 42616 Query 132335 TTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATTC 132394 || | | ||||| || || |||||| | ||||||| ||| ||||| | Sbjct 42615 TTTCTAACACCGTGCTGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAAAGATCTGTT 42556 Query 132395 GATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTTA 132454 | | || | ||||||| |||| |||||||| || | ||| | ||| ||| || Sbjct 42555 GGT---GATCTGTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAATA 42499 Query 132455 TAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGACTCAGGGCACCATAA 132514 || | || || | || | |||| | ||| || || || ||||| Sbjct 42498 TAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCATAG 42439 Query 132515 TAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAAA 132574 |||||||| || |||||| | |||||| ||||| || || || || || || Sbjct 42438 TAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAAAC 42379 Query 132575 TTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTA 132634 | | | | || ||||| |||| || || | || ||||| || || | || Sbjct 42378 CTCATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCCGT 42319 Query 132635 AAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGAGA 132694 ||||| ||| || ||| | || |||||| ||||| | || ||||||||||| || Sbjct 42318 AAATTTGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTTTATTCAGG 42259 Query 132695 TTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGTCA-AAG-TTTTTAGTCC 132752 || || || |||| | ||| || | | || || ||||| ||| ||||| | || Sbjct 42258 TTTTTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAAGATTTTTCGGCC 42199 Query 132753 TTTTGTTGGCA-AAACAA-TTGACGGCAATCGAGGCCAAATTGCATACGGCTGTCTCTTT 132810 | || ||||| || | ||| || || || ||||| ||||| ||| | || | Sbjct 42198 GT-------CACAAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCTATTTCGTC 42146 Query 132811 ATTATCGCT--ATACTGTACGATTTCTGCACACAAATTACTG---TTTCGAATAACTCCC 132865 | |||| ||||| || ||||| | || ||||||||| ||| ||| ||| Sbjct 42145 --TGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTT---ATAGTTCCA 42091 Query 132866 AAGtttttttGATTGTTTTTCTCGTTTACGTTA-TCTTTATGCAACATGTACGGACCTCC 132924 | |||| ||||||| |||| || |||| | |||||| | |||||| || || Sbjct 42090 ACATTTTGTTGATTGCTTTT-TCTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGTACC 42032 Query 132925 GGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAACGCC---AAAATTTG-TT 132980 || || || ||| ||| || || |||| | ||| | |||| | || Sbjct 42031 AGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTGAGCCTTAACAATTCGATT 41972 Query 132981 CTTTAAACTTGCCCTGAGTCTCGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAGC 133040 || | | ||| | || || | | || ||| ||||||||||| || | Sbjct 41971 CTGTCGCC----CCTCTTTTTCATATTTGACATACAATTTTTCAAATTCTTCACCCCAAA 41916 Query 133041 AGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTTTTCTCCTGCGCTC- 133099 || | || |||||| || | || ||||||||||| ||||| | ||| | ||| Sbjct 41915 CATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATC--CTCGTTGGCTTC 41858 Query 133100 -ACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCAT 133158 |||| ||||| || | ||| |||||| |||| |||||| ||| |||||| Sbjct 41857 AACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCCG--- 41801 Query 133159 ATCTTCCGCGC--CCA-TATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCA 133215 || |||| | ||| ||||| ||| | ||| ||||| ||| | ||||| |||||| Sbjct 41800 ATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCCA 41741 Query 133216 AGGCTCGATATATACGGCCAAAGCGCCTTTCCTTTT---ACCTCCCTGATCCACAT 133268 |||||| | || | || || || ||| ||||| ||| |||||||| |||| Sbjct 41740 AGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCGACAT 41685 >seq3603 Length=2672878 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| ||||| | || || || | || ||| | || |||||| || Sbjct 316128 AAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 316187 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| || || ||||||||||| || || || ||| Sbjct 316188 TCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 316247 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | | ||||||||| || || |||| | | | | | || || Sbjct 316248 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTAC 316307 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| || || || | || || ||| Sbjct 316308 AACATTCAAAAGGAGTCGACTTTGCACTTGGTG 316340 >seq359 Length=456481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || |||||||| || || ||||| | || ||| | || || ||| | Sbjct 65888 CAAAATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTGGAGCC 65947 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| || |||||| | || || ||||| ||||| || || || ||||| || Sbjct 65948 TTCCGATACGATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGA 66007 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||| | ||||| | || |||||||||||| ||||||| Sbjct 66008 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATG 66048 >seq3289 Length=20206255 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | || || || | || || | || ||||| | Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | || ||| ||||| ||||||||||| || ||||| ||||| Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14369675 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | | |||| || |||||||| | ||||||| | | | | || || || Sbjct 14369674 CAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAAT 14369615 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| ||||| | ||||| ||| Sbjct 14369614 ATCCAGAAAGAGTCTACTTTGCATTTGGTG 14369585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429865104897150