Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq466 567 9e-157
seq3134 259 6e-64
>seq466
Length=100518
Score = 567 bits (628), Expect = 9e-157
Identities = 1243/1852 (67%), Gaps = 34/1852 (2%)
Strand=Plus/Minus
Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930
|| ||||| || || ||||| ||||| || ||||| || || |||| |||||
Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003
Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990
|| || |||| ||| ||| | || || || | ||| ||||| | ||||||||||
Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943
Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050
||||| || || || || || || || |||||||| ||| | | |||| | || |||
Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883
Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGA 62106
|| | ||||| || || || | | | ||||| || | | || | |||| || || ||
Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGA 42824
Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166
||| | ||| ||||| ||| || |||||||||| ||| || | ||| |||||
Sbjct 42823 TCCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAA 42764
Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62226
| | | | | ||| ||||| || |||||||| || || |||||||||| | || ||
Sbjct 42763 ATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATA 42704
Query 62227 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62286
||| || || || || || | |||||||| || |||| ||||| ||||| |||||
Sbjct 42703 AATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGC 42644
Query 62287 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT---- 62342
|| ||||| || || | | ||| ||||||| ||||| ||| ||||||
Sbjct 42643 TGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGAC 42589
Query 62343 CTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 62401
|||||| || | ||||| | ||||||||| | ||| |||
Sbjct 42588 CTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGT 42529
Query 62402 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 62460
| || || || || | | || ||| | ||| || || || || || ||||||| |
Sbjct 42528 AAAACTCCCTTGCTTACTGGACT-TCCAATATAGGTTTCATACGGGCCATCCTTCTTGGA 42470
Query 62461 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 62520
| ||||||||| || || || || || || ||||| ||||| ||||| | | ||| |
Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410
Query 62521 ATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 62580
| ||||| ||| ||| | ||| | | | ||||| || || ||||| || ||
Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350
Query 62581 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62640
||| ||||||||||| ||||| | || | ||| || ||| || ||||| | ||
Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290
Query 62641 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62700
|||||| || ||||| || |||||||| || ||| || || | ||| ||||| ||
Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230
Query 62701 CAGTTTGAGAAAATCAAA-------TCGCCCATCTATTACAAACATGTTCAATGCAACAG 62753
|||||| || || | ||| || || ||||||||||| | || | |
Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTC----ACAAACATGTTTAGGGCTATTG 42174
Query 62754 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 62813
|||| | |||||| || |||| || | | | | ||| | | || || ||||| |
Sbjct 42173 ATGCTAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATA 42114
Query 62814 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 62873
|||||| ||||| || ||||| | |||||||||||| || ||| ||||||||| || |
Sbjct 42113 AATTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTT 42054
Query 62874 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 62933
|| |||| ||| | || |||||||| || | |||||||| || || || ||| |
Sbjct 42053 TAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAG 41994
Query 62934 CTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTT 62993
| ||||||| | || || | || | ||| |||| ||| ||||||| ||
Sbjct 41993 ATTGAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTT 41934
Query 62994 CGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACC 63053
| || || || |||||||||| | ||| || || |||| | ||||||||||||||||
Sbjct 41933 CAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACC 41874
Query 63054 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63113
| || ||| | | || || ||||||||||||||||||||||| | || |||||
Sbjct 41873 AATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATA 41814
Query 63114 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63173
|||| | | | ||||||||| ||||| ||||| |||||||| || | || | | |
Sbjct 41813 GATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACA 41754
Query 63174 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63233
|| |||||||| || |||| ||| || || | |||| || | ||| || ||||
Sbjct 41753 CGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCT 41694
Query 63234 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 63293
|||| | || | || || ||| | ||||| | |||||| | | ||||| || |
Sbjct 41693 GATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAG 41634
Query 63294 TACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 63353
||||||| || || || ||| || | || | || |||||| | || ||||| |
Sbjct 41633 TACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAA 41574
Query 63354 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 63413
| || |||||| ||| ||||| | |||||| | | || || | | | || || || |
Sbjct 41573 TGCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAA 41514
Query 63414 TACTATC--AT-CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63470
|| ||| || |||| |||||| |||||||| || | |||| |||| | ||
Sbjct 41513 TAGAATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGG 41457
Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACG 63530
| ||| ||| | || || || || || ||||| | ||| || |||| ||| || |
Sbjct 41456 CAGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATG 41397
Query 63531 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590
| ||||| || || || ||||| ||| || || | |||||||||||||| |||||
Sbjct 41396 TTTCAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGT 41337
Query 63591 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63650
|||| |||| ||| | || ||| || ||||| | ||| || ||| || | || |
Sbjct 41336 GCTGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCT 41277
Query 63651 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702
|||| ||||| || || ||| ||| || || || ||||| || | |||||
Sbjct 41276 TAAATCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225
>seq3134
Length=2474545
Score = 259 bits (286), Expect = 6e-64
Identities = 567/841 (67%), Gaps = 15/841 (2%)
Strand=Plus/Minus
Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420
|| |||||| || ||||| ||||| ||| || || ||||| ||||| || || ||
Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142
Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480
|| || |||||||||| || ||||| | || || | ||| | || | |
Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082
Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540
||| | || | ||| || ||||| || |||||| ||| | | | ||||||||
Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022
Query 32541 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 32600
|| || | || || || || || |||||||||| || |||||||| | || || ||
Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962
Query 32601 GTTATAATAGATCTTACTGTTTCT-TCACTCGGTGGA---TACAATAAATGTTTAAACAT 32656
| || ||||| | || | | || || ||| | || ||||| | |||||
Sbjct 573961 GAGAT----GATCTCAATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACAT 573906
Query 32657 CAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 32715
|| ||| || || ||||| || || |||||||| | || | |||||| || || |
Sbjct 573905 CAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAG 573847
Query 32716 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 32775
|||| |||||||| ||||||||||| || |||||||| || || ||||| || ||
Sbjct 573846 TGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAA 573787
Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGT 32832
|||| || || || || || ||||| || || | | ||| ||| | | | || ||
Sbjct 573786 AGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC-CTTA 573728
Query 32833 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891
| | |||||| | ||||| ||||||||| || || |||||||| || ||
Sbjct 573727 GAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATT 573668
Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951
|||||||| ||||| | | || ||| | |||||| ||||||| | ||
Sbjct 573667 GCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTG 573608
Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011
||||||||||| || | || || ||||| || ||||| || |||||||| | ||||||
Sbjct 573607 TACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCT 573548
Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071
|||||||| ||||| | ||| || || | | ||| || || || || || || |
Sbjct 573547 GTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAG 573488
Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131
|| |||||||| |||| |||||| || |||| |||| |||||| |
Sbjct 573487 GCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCC 573428
Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191
|| ||| | | ||| ||||| | ||||||||| ||||| ||||| ||||||||||| |||
Sbjct 573427 CAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGCC 573368
Query 33192 T 33192
|
Sbjct 573367 T 573367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633524836988000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |