Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq466 567 9e-157 seq3134 259 6e-64 >seq466 Length=100518 Score = 567 bits (628), Expect = 9e-157 Identities = 1243/1852 (67%), Gaps = 34/1852 (2%) Strand=Plus/Minus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| || || ||||| ||||| || ||||| || || |||| ||||| Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || || |||| ||| ||| | || || || | ||| ||||| | |||||||||| Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || || || || || || || |||||||| ||| | | |||| | || ||| Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGA 62106 || | ||||| || || || | | | ||||| || | | || | |||| || || || Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATT-TCTTCGGGTATAGATTCTATATTTTGTATAGA 42824 Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 ||| | ||| ||||| ||| || |||||||||| ||| || | ||| ||||| Sbjct 42823 TCCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAA 42764 Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62226 | | | | | ||| ||||| || |||||||| || || |||||||||| | || || Sbjct 42763 ATCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATA 42704 Query 62227 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62286 ||| || || || || || | |||||||| || |||| ||||| ||||| ||||| Sbjct 42703 AATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGC 42644 Query 62287 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT---- 62342 || ||||| || || | | ||| ||||||| ||||| ||| |||||| Sbjct 42643 TGTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGAC 42589 Query 62343 CTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 62401 |||||| || | ||||| | ||||||||| | ||| ||| Sbjct 42588 CTTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGT 42529 Query 62402 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 62460 | || || || || | | || ||| | ||| || || || || || ||||||| | Sbjct 42528 AAAACTCCCTTGCTTACTGGACT-TCCAATATAGGTTTCATACGGGCCATCCTTCTTGGA 42470 Query 62461 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 62520 | ||||||||| || || || || || || ||||| ||||| ||||| | | ||| | Sbjct 42469 CAATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAA 42410 Query 62521 ATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 62580 | ||||| ||| ||| | ||| | | | ||||| || || ||||| || || Sbjct 42409 AAGAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCC 42350 Query 62581 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62640 ||| ||||||||||| ||||| | || | ||| || ||| || ||||| | || Sbjct 42349 TTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGG 42290 Query 62641 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62700 |||||| || ||||| || |||||||| || ||| || || | ||| ||||| || Sbjct 42289 ATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTT 42230 Query 62701 CAGTTTGAGAAAATCAAA-------TCGCCCATCTATTACAAACATGTTCAATGCAACAG 62753 |||||| || || | ||| || || ||||||||||| | || | | Sbjct 42229 CAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTC----ACAAACATGTTTAGGGCTATTG 42174 Query 62754 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 62813 |||| | |||||| || |||| || | | | | ||| | | || || ||||| | Sbjct 42173 ATGCTAAATTACATACAGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATA 42114 Query 62814 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 62873 |||||| ||||| || ||||| | |||||||||||| || ||| ||||||||| || | Sbjct 42113 AATTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTT 42054 Query 62874 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 62933 || |||| ||| | || |||||||| || | |||||||| || || || ||| | Sbjct 42053 TAAAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAG 41994 Query 62934 CTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTT 62993 | ||||||| | || || | || | ||| |||| ||| ||||||| || Sbjct 41993 ATTGAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTT 41934 Query 62994 CGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACC 63053 | || || || |||||||||| | ||| || || |||| | |||||||||||||||| Sbjct 41933 CAAATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACC 41874 Query 63054 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63113 | || ||| | | || || ||||||||||||||||||||||| | || ||||| Sbjct 41873 AATCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATA 41814 Query 63114 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63173 |||| | | | ||||||||| ||||| ||||| |||||||| || | || | | | Sbjct 41813 GATCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACA 41754 Query 63174 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63233 || |||||||| || |||| ||| || || | |||| || | ||| || |||| Sbjct 41753 CGTCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCT 41694 Query 63234 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 63293 |||| | || | || || ||| | ||||| | |||||| | | ||||| || | Sbjct 41693 GATCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAG 41634 Query 63294 TACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 63353 ||||||| || || || ||| || | || | || |||||| | || ||||| | Sbjct 41633 TACCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAA 41574 Query 63354 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 63413 | || |||||| ||| ||||| | |||||| | | || || | | | || || || | Sbjct 41573 TGCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAA 41514 Query 63414 TACTATC--AT-CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63470 || ||| || |||| |||||| |||||||| || | |||| |||| | || Sbjct 41513 TAGAATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGG 41457 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACG 63530 | ||| ||| | || || || || || ||||| | ||| || |||| ||| || | Sbjct 41456 CAGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATG 41397 Query 63531 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 | ||||| || || || ||||| ||| || || | |||||||||||||| ||||| Sbjct 41396 TTTCAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGT 41337 Query 63591 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63650 |||| |||| ||| | || ||| || ||||| | ||| || ||| || | || | Sbjct 41336 GCTGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCT 41277 Query 63651 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 |||| ||||| || || ||| ||| || || || ||||| || | ||||| Sbjct 41276 TAAATCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225 >seq3134 Length=2474545 Score = 259 bits (286), Expect = 6e-64 Identities = 567/841 (67%), Gaps = 15/841 (2%) Strand=Plus/Minus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 || |||||| || ||||| ||||| ||| || || ||||| ||||| || || || Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 || || |||||||||| || ||||| | || || | ||| | || | | Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082 Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540 ||| | || | ||| || ||||| || |||||| ||| | | | |||||||| Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022 Query 32541 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 32600 || || | || || || || || |||||||||| || |||||||| | || || || Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962 Query 32601 GTTATAATAGATCTTACTGTTTCT-TCACTCGGTGGA---TACAATAAATGTTTAAACAT 32656 | || ||||| | || | | || || ||| | || ||||| | ||||| Sbjct 573961 GAGAT----GATCTCAATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACAT 573906 Query 32657 CAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 32715 || ||| || || ||||| || || |||||||| | || | |||||| || || | Sbjct 573905 CAGGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAG 573847 Query 32716 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 32775 |||| |||||||| ||||||||||| || |||||||| || || ||||| || || Sbjct 573846 TGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAA 573787 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGT 32832 |||| || || || || || ||||| || || | | ||| ||| | | | || || Sbjct 573786 AGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGC-CTTA 573728 Query 32833 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 | | |||||| | ||||| ||||||||| || || |||||||| || || Sbjct 573727 GAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATT 573668 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 |||||||| ||||| | | || ||| | |||||| ||||||| | || Sbjct 573667 GCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTG 573608 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||||||||| || | || || ||||| || ||||| || |||||||| | |||||| Sbjct 573607 TACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCT 573548 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 |||||||| ||||| | ||| || || | | ||| || || || || || || | Sbjct 573547 GTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAG 573488 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 || |||||||| |||| |||||| || |||| |||| |||||| | Sbjct 573487 GCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCC 573428 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || ||| | | ||| ||||| | ||||||||| ||||| ||||| ||||||||||| ||| Sbjct 573427 CAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGCC 573368 Query 33192 T 33192 | Sbjct 573367 T 573367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633524836988000