Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 172 5e-38
seq3603 120 3e-22
seq3289 114 1e-20
seq359 107 2e-18
>seq3134
Length=2474545
Score = 172 bits (190), Expect = 5e-38
Identities = 217/294 (74%), Gaps = 8/294 (3%)
Strand=Plus/Plus
Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047
|||||| |||||||||||| |||||||| || | || ||||||| || | ||| ||
Sbjct 1232089 AAACTTGCGCTTACAGCCCTGATAGTTCATGTAGCGTATCTTGCCAAAGATGTCGCGCTC 1232148
Query 51048 TTTGAACGGCCT--GTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTA 51105
|| | |||| |||||| ||||||| || |||||||| || |||||||| ||
Sbjct 1232149 CTT--CCAGCCTTGGTCGTGAACACCGCCTATGGACCACATGCAGCCCACATAGCCATTG 1232206
Query 51106 GGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATG 51165
|||||||| || |||| |||||| | ||||| || | |||| || |||||||||
Sbjct 1232207 GGATCGCGTCCGTCCAGGCTGTACTTGTCGTTCAGCAGTATGCTGTATTCCAATGCCAGC 1232266
Query 51166 TCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGC 51225
|||| | |||||| |||| || || ||||||||||||||||||| | || |||
Sbjct 1232267 TCTGGCGTTTCCGTCCACTCCAATATCTTTTTGGCCCAGTACATGCGCAGAAATCCATGC 1232326
Query 51226 ATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277
|| |||||||| || | |||||| || ||||||||||||| |||||||
Sbjct 1232327 ATTTTGCCCTCCTTCACC--AGCTGCAGCTGTGCCGAGTTCCACAGGTCGTCGT 1232378
>seq3603
Length=2672878
Score = 120 bits (132), Expect = 3e-22
Identities = 158/218 (72%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052
|||| ||||||||| ||||| || || | ||||| || ||||||| | || || |||
Sbjct 316126 GGAA-AATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAG 316184
Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
| |||||||| |||||| | ||| |||||| ||||||||||| ||||||||
Sbjct 316185 CCCTCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCA 316244
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
|| || ||||| | || ||||||||||| || | || |||| ||||| | ||
Sbjct 316245 GATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGAC 316304
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| |||||||| || || || | || || |||||
Sbjct 316305 TACAACATTCAAAAGGAGTCGACTTTGCACTTGGTGCT 316342
>seq3289
Length=20206255
Score = 114 bits (126), Expect = 1e-20
Identities = 158/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| |||||||| |||||||| || | || ||||| ||||||| | || || || ||
Sbjct 14369797 ACGATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCG 14369738
Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
|| || || |||||| | || |||| || | || ||||||||||| ||||| ||
Sbjct 14369737 TCGGATACCATCGAG--AATGTTAAAGCCAAGATCCAG-GACAAAGAAGGAATTCCTCCA 14369681
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
|| || ||||| | ||||| || ||||| || || ||||||| |||||| | ||
Sbjct 14369680 GATCAGCAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGAC 14369621
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| || ||||| || || | ||||| |||||
Sbjct 14369620 TACAATATCCAGAAAGAGTCTACTTTGCATTTGGTGCT 14369583
>seq359
Length=456481
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || |||| || | || |||||| | ||
Sbjct 66576 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66635
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || |||||| | ||| || ||| ||||| || || ||||| || |||||
Sbjct 66636 GATACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 66695
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||| ||| | ||||||| ||||||| | || ||||||
Sbjct 66696 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAAT 66755
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || |||||
Sbjct 66756 ATCCAGAAGGAGTCGACCCTCCACTTGGTGCT 66787
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || |||| || | || |||||| | |
Sbjct 66348 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTAGT 66407
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| ||||| | || | ||| ||||| || || || || || |||||
Sbjct 66408 GATACCATTGAGAACGTGAAGGCCAAGATTCAG-GACAAGGAGGGAATCCCTCCAGACCA 66466
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||||||||| ||| | ||||||| ||||| || ||||||||
Sbjct 66467 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAA 66526
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| || || || || |||||
Sbjct 66527 CATCCAGAAGGAATCGACCCTCCACTTGGTGCT 66559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433256545566950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |