Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3134 172 5e-38 seq3603 120 3e-22 seq3289 114 1e-20 seq359 107 2e-18 >seq3134 Length=2474545 Score = 172 bits (190), Expect = 5e-38 Identities = 217/294 (74%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 |||||| |||||||||||| |||||||| || | || ||||||| || | ||| || Sbjct 1232089 AAACTTGCGCTTACAGCCCTGATAGTTCATGTAGCGTATCTTGCCAAAGATGTCGCGCTC 1232148 Query 51048 TTTGAACGGCCT--GTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTA 51105 || | |||| |||||| ||||||| || |||||||| || |||||||| || Sbjct 1232149 CTT--CCAGCCTTGGTCGTGAACACCGCCTATGGACCACATGCAGCCCACATAGCCATTG 1232206 Query 51106 GGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATG 51165 |||||||| || |||| |||||| | ||||| || | |||| || ||||||||| Sbjct 1232207 GGATCGCGTCCGTCCAGGCTGTACTTGTCGTTCAGCAGTATGCTGTATTCCAATGCCAGC 1232266 Query 51166 TCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGC 51225 |||| | |||||| |||| || || ||||||||||||||||||| | || ||| Sbjct 1232267 TCTGGCGTTTCCGTCCACTCCAATATCTTTTTGGCCCAGTACATGCGCAGAAATCCATGC 1232326 Query 51226 ATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 || |||||||| || | |||||| || ||||||||||||| ||||||| Sbjct 1232327 ATTTTGCCCTCCTTCACC--AGCTGCAGCTGTGCCGAGTTCCACAGGTCGTCGT 1232378 >seq3603 Length=2672878 Score = 120 bits (132), Expect = 3e-22 Identities = 158/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 |||| ||||||||| ||||| || || | ||||| || ||||||| | || || ||| Sbjct 316126 GGAA-AATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAG 316184 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | |||||||| |||||| | ||| |||||| ||||||||||| |||||||| Sbjct 316185 CCCTCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCA 316244 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | || ||||||||||| || | || |||| ||||| | || Sbjct 316245 GATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGAC 316304 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| |||||||| || || || | || || ||||| Sbjct 316305 TACAACATTCAAAAGGAGTCGACTTTGCACTTGGTGCT 316342 >seq3289 Length=20206255 Score = 114 bits (126), Expect = 1e-20 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| |||||||| || | || ||||| ||||||| | || || || || Sbjct 14369797 ACGATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCG 14369738 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || || || |||||| | || |||| || | || ||||||||||| ||||| || Sbjct 14369737 TCGGATACCATCGAG--AATGTTAAAGCCAAGATCCAG-GACAAAGAAGGAATTCCTCCA 14369681 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | ||||| || ||||| || || ||||||| |||||| | || Sbjct 14369680 GATCAGCAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGAC 14369621 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| || || | ||||| ||||| Sbjct 14369620 TACAATATCCAGAAAGAGTCTACTTTGCATTTGGTGCT 14369583 >seq359 Length=456481 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || |||| || | || |||||| | || Sbjct 66576 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66635 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 66636 GATACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 66695 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| ||| | ||||||| ||||||| | || |||||| Sbjct 66696 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAAT 66755 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || ||||| Sbjct 66756 ATCCAGAAGGAGTCGACCCTCCACTTGGTGCT 66787 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || |||| || | || |||||| | | Sbjct 66348 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTAGT 66407 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| ||||| || || || || || ||||| Sbjct 66408 GATACCATTGAGAACGTGAAGGCCAAGATTCAG-GACAAGGAGGGAATCCCTCCAGACCA 66466 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| ||| | ||||||| ||||| || |||||||| Sbjct 66467 GCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAA 66526 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || || || ||||| Sbjct 66527 CATCCAGAAGGAATCGACCCTCCACTTGGTGCT 66559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433256545566950