Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq3385 84.2 2e-11 >seq3385 Length=25233164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 38456 CATGAAGCAGACGCCGCAACAGTTGGCCGAGGCCGGCTTCTACTATTCGGGCACCGGAGA 38515 ||||||||||| ||| || ||| | |||||||| || |||| ||| | ||| ||| || Sbjct 9217700 CATGAAGCAGAAGCCACAGCAGCTCGCCGAGGCGGGTTTCTTTTATACTGGCGTCGGGGA 9217641 Query 38516 CCAGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGA-GCCTGCGGACGATC 38574 | || || ||| ||||||||||| || ||||||||||| | | | ||||| | Sbjct 9217640 TCGCGTGCGCTGCTTCAGCTGCGGCGGCGGGCTCAAGGACTGGGACGACAAC-GACGAGC 9217582 Query 38575 CGTGGGCGCAGCACGCGCGCTGG 38597 | |||| |||||| |||| |||| Sbjct 9217581 CCTGGGAGCAGCATGCGCTCTGG 9217559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537512277858800