Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 242 4e-59
seq3383 116 4e-21
>seq3134
Length=2474545
Score = 242 bits (268), Expect = 4e-59
Identities = 600/894 (67%), Gaps = 25/894 (3%)
Strand=Plus/Minus
Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802
|||||||| ||||| |||||||| ||||| || | |||| | || | || || |||
Sbjct 574249 TAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATT-TGATG--TGACGCC-CAT 574194
Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861
| || ||||| || |||||||| ||||||||||| || || || ||||| || |||
Sbjct 574193 TCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCAT 574134
Query 92862 ATTCACTAGTG--ATTGGATTCTTGGCGTTATAATACTTTTC--ACC----GATCAACTC 92913
| || | || | |||||||| | ||| || | ||| | ||| | |||||
Sbjct 574133 TTCCATGAATGTAAACGGATTCTTTGTGTTGTAC-AGTTTGCCGACCCCAAGTTCAACCA 574075
Query 92914 GTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCC 92973
| | | | ||| || ||||| || || || | ||||| | | |||||||| ||
Sbjct 574074 GCAGA-----CGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCC 574020
Query 92974 TAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTT 93032
| | | || || || ||||| || |||||| || | || || ||| || ||
Sbjct 574019 GATCAAATTGACCGGCAGTGCGTCAGT-AAGAAACTCCTGTTCAATGGTAACAGCATCGG 573961
Query 93033 TCAAGATTTCTATTACTCTACTATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAG 93091
| ||| || || | | || | || || || || | || | | |||| | |
Sbjct 573960 AGATGATCTCAATGATGCG-CTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGG 573902
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
||||||||| ||| | || ||||| || || |||| || || ||| || |
Sbjct 573901 ACAGCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGG 573842
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || || || ||||| |||||||| || |||||||| || || ||| ||
Sbjct 573841 CCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAG 573782
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271
|| || || || || |||||||| | || || || |||| || || | ||| |
Sbjct 573781 ATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGAT 573722
Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331
||||| | ||||| ||||| || ||||| || | |||||| || || |||
Sbjct 573721 ATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTA 573662
Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391
||||| ||||| |||| | || ||| ||||| ||||| || || | | ||||||
Sbjct 573661 AATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATT 573602
Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451
|| || |||||||||||||| || || || || || ||||| || | ||| || || |||
Sbjct 573601 TCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATC 573542
Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511
|| ||||| || ||| | ||| || ||||| || || || || |||||||| || |||
Sbjct 573541 TGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCA 573482
Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TTAAGCTTATCCCAATC 93570
||||| |||| | ||| || ||||| ||| | ||| ||| || | |||| ||
Sbjct 573481 AAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGT-GCCCAGTC 573423
Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
| ||||| || || ||||| ||||| || |||||||| || ||||| || ||
Sbjct 573422 AGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369
>seq3383
Length=19223366
Score = 116 bits (128), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 10919777 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 10919836
Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||||||
Sbjct 10919837 GTGGGTTCGAACCCCACACCTGACAA 10919862
Score = 116 bits (128), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 10926541 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 10926600
Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||||||
Sbjct 10926601 GTGGGTTCGAACCCCACACCTGACAA 10926626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556766620917200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |