Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3134 242 4e-59 seq3383 116 4e-21 >seq3134 Length=2474545 Score = 242 bits (268), Expect = 4e-59 Identities = 600/894 (67%), Gaps = 25/894 (3%) Strand=Plus/Minus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| ||||| |||||||| ||||| || | |||| | || | || || ||| Sbjct 574249 TAGAAATCCGCATCAAGTGTAAACACATTATCTAAACGATT-TGATG--TGACGCC-CAT 574194 Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 | || ||||| || |||||||| ||||||||||| || || || ||||| || ||| Sbjct 574193 TCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCAT 574134 Query 92862 ATTCACTAGTG--ATTGGATTCTTGGCGTTATAATACTTTTC--ACC----GATCAACTC 92913 | || | || | |||||||| | ||| || | ||| | ||| | ||||| Sbjct 574133 TTCCATGAATGTAAACGGATTCTTTGTGTTGTAC-AGTTTGCCGACCCCAAGTTCAACCA 574075 Query 92914 GTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCC 92973 | | | | ||| || ||||| || || || | ||||| | | |||||||| || Sbjct 574074 GCAGA-----CGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCC 574020 Query 92974 TAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTT 93032 | | | || || || ||||| || |||||| || | || || ||| || || Sbjct 574019 GATCAAATTGACCGGCAGTGCGTCAGT-AAGAAACTCCTGTTCAATGGTAACAGCATCGG 573961 Query 93033 TCAAGATTTCTATTACTCTACTATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAG 93091 | ||| || || | | || | || || || || | || | | |||| | | Sbjct 573960 AGATGATCTCAATGATGCG-CTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGG 573902 Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 ||||||||| ||| | || ||||| || || |||| || || ||| || | Sbjct 573901 ACAGCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGG 573842 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || ||||| |||||||| || |||||||| || || ||| || Sbjct 573841 CCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAG 573782 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 || || || || || |||||||| | || || || |||| || || | ||| | Sbjct 573781 ATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGAT 573722 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||| | ||||| ||||| || ||||| || | |||||| || || ||| Sbjct 573721 ATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTA 573662 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 ||||| ||||| |||| | || ||| ||||| ||||| || || | | |||||| Sbjct 573661 AATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATT 573602 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 || || |||||||||||||| || || || || || ||||| || | ||| || || ||| Sbjct 573601 TCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATC 573542 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 || ||||| || ||| | ||| || ||||| || || || || |||||||| || ||| Sbjct 573541 TGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCA 573482 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TTAAGCTTATCCCAATC 93570 ||||| |||| | ||| || ||||| ||| | ||| ||| || | |||| || Sbjct 573481 AAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGT-GCCCAGTC 573423 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | ||||| || || ||||| ||||| || |||||||| || ||||| || || Sbjct 573422 AGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369 >seq3383 Length=19223366 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 10919777 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 10919836 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 10919837 GTGGGTTCGAACCCCACACCTGACAA 10919862 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 10926541 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 10926600 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 10926601 GTGGGTTCGAACCCCACACCTGACAA 10926626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556766620917200